Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1054
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   6e-24
SB_28757| Best HMM Match : DUF1014 (HMM E-Value=4.9)                   30   1.8  
SB_39014| Best HMM Match : TPR_2 (HMM E-Value=0.19)                    30   1.8  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 30   1.8  
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)                28   5.5  
SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 28   7.3  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 28   7.3  
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score =  107 bits (258), Expect = 6e-24
 Identities = 59/147 (40%), Positives = 82/147 (55%)
 Frame = +3

Query: 183 IAQHELYEDGEILVEAILKDMATLPVLHAEQKEGGTQLKLIIDYPNGVQALFKPMRFARD 362
           +    L   G+  V  IL  ++  P++ A     GTQLK  +      + +FKP R++R+
Sbjct: 132 VTSRHLTPSGKQEVNLILDALSYKPIVAAGVGYKGTQLKATLLLEGNQKVVFKPGRYSRE 191

Query: 363 VQTLPNHFYFSDYERHNAEIAAFHLDRILGFRRAMPVVGRVLNMTTEIYDVTEGDILKTF 542
              +    Y   Y+RHN EIAAFHLDR+LGF RA PV GRV+++  EI  + E ++L TF
Sbjct: 192 -HVIKGKPY-DGYDRHNGEIAAFHLDRVLGFNRAPPVAGRVVDLQDEIEPIAERNLLHTF 249

Query: 543 FVSPANNFCFHGKCSYYCDTGHAICGN 623
           F     N CF+G C YYC+   A C N
Sbjct: 250 F-KKGGNTCFYGVC-YYCNKEEAACAN 274


>SB_28757| Best HMM Match : DUF1014 (HMM E-Value=4.9)
          Length = 434

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 522 GDILKTFFVSPANNFCFHGKCS 587
           GD +  F  SP +  C HGKCS
Sbjct: 169 GDFVDNFVCSPNSEECMHGKCS 190


>SB_39014| Best HMM Match : TPR_2 (HMM E-Value=0.19)
          Length = 1036

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 522 GDILKTFFVSPANNFCFHGKCS 587
           GD +  F  SP +  C HGKCS
Sbjct: 333 GDFVDNFVCSPNSEECMHGKCS 354


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 522 GDILKTFFVSPANNFCFHGKCS 587
           GD +  F  SP +  C HGKCS
Sbjct: 162 GDFVDNFVCSPNSEECMHGKCS 183


>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
          Length = 1821

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 3    LTTYNKSCSLSYRGPPS-IMQWSYLRTEX*MF*GPXNPTIGEMEDLELSVNASNLEKFQL 179
            LTT ++   ++YRG    + ++  L  E  +     N T G+  D+ L+         +L
Sbjct: 1231 LTTEDREMEVAYRGDRRYVNRFVRLSAEDVLGDVASNFTSGQTRDVYLTKKNDQNNCLEL 1290

Query: 180  KIAQHELYEDGEILVEAIL 236
            K     + ++GE+ +EA++
Sbjct: 1291 KELTRSIIQEGEVEIEAMI 1309


>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 428 SCYFSIVPFVI-REIEVVRQRLDITGESHWFKECLNSVWIVYYEFELRSA 282
           S  FSI+   I R + VVR     T  S+W K+ +  +WI+     +R+A
Sbjct: 120 SSLFSILALSIDRFLAVVRPIQHKTLGSNWLKKAVPVIWIISLALPIRTA 169


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 428 SCYFSIVPFVI-REIEVVRQRLDITGESHWFKECLNSVWIVYYEFELRSA 282
           S  FSI+   I R + VVR     T  S+W K+ +  +WI+     +R+A
Sbjct: 105 SSLFSILALSIDRFLAVVRPIQHKTLGSNWLKKAVPVIWIISLALPIRTA 154


>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1288

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 479  AHDRHCPPEAEYPVEMKSCYFSIVPFVIREI 387
            +H  HCPP      +  +C  S++ FV+  I
Sbjct: 1197 SHTCHCPPNINLLEDSATCNTSVINFVVLNI 1227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,470
Number of Sequences: 59808
Number of extensions: 359251
Number of successful extensions: 815
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)