Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1054
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25320.1 68414.m03142 leucine-rich repeat transmembrane prote...    28   4.5  
At3g03260.1 68416.m00322 homeobox-leucine zipper family protein ...    28   6.0  
At1g22230.1 68414.m02779 expressed protein ; expression supporte...    28   6.0  
At1g20780.1 68414.m02602 armadillo/beta-catenin repeat protein-r...    28   6.0  

>At1g25320.1 68414.m03142 leucine-rich repeat transmembrane protein
           kinase, putative similar to putative receptor-like
           protein kinase GI:4262228 from [Arabidopsis thaliana]
          Length = 702

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
 Frame = +3

Query: 285 GTQLKLIIDYPNGVQAL--FKPMRFARDVQTLPNHFYFSDYERHNAEIAAFHLDRILGFR 458
           G +LK++     G+  L  F P ++      L N     D E H ++    HL  I G  
Sbjct: 505 GVRLKIMRGISRGLVYLHEFSPKKYVHGSLKLSNILLGQDMEPHISDFGLMHLSSIAGTL 564

Query: 459 RAMPVVGRVLNMTTEIYDVTEGDILKTFFVSP 554
            +   V R  N T     +     L +F+++P
Sbjct: 565 ES-TTVDRPSNKTAS--SIGSSANLSSFYLAP 593


>At3g03260.1 68416.m00322 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           L1 specific homeobox gene ATML1/ovule-specific homeobox
           protein A20, GB:CAB36819
          Length = 699

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = -3

Query: 545 EKCLEYVPFGDVIDLG--GHVEYAAHDRHCPPEAEY--PVEMKSCYFSIVPFVIREIEVV 378
           E  L YVP  D I  G  G   Y     + PP  +   P  +     S++  +       
Sbjct: 162 EDSLAYVPSLDRISYGINGGNMYEPSSSYGPPNFQIIQPRPLAETDMSLLSEIAASAVEE 221

Query: 377 RQRLDITGESHWFKECLNSVWIV 309
            +RL +  E  W K C++  +++
Sbjct: 222 LKRLFLAEEQFWVKSCIDETYVI 244


>At1g22230.1 68414.m02779 expressed protein ; expression supported
           by MPSS
          Length = 314

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 436 STGYSASGGQCRSWAAYST*PPRSMTSPKGTYSRHFSCP 552
           S+GYSA    C    A+ + P +S++SP  +++R  + P
Sbjct: 9   SSGYSADLMVCFPSRAHLSLPSKSISSPSSSFNRRQNAP 47


>At1g20780.1 68414.m02602 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 801

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 438 DRILGFRRAMPVVGRVLNMTTEIYDVTEGDILKTFFVSP 554
           DR LG  + M  VG    + ++++ + +GDI    FV+P
Sbjct: 521 DRDLGLTQEMLEVGAFEKIISKVFGIRQGDIKGMRFVNP 559


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,178,460
Number of Sequences: 28952
Number of extensions: 255727
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)