Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1053
(769 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 40 0.001
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.022
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.022
At2g05510.1 68415.m00583 glycine-rich protein 35 0.069
At1g61255.1 68414.m06903 expressed protein 35 0.069
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.091
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.091
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 34 0.091
At1g27710.1 68414.m03387 glycine-rich protein 33 0.16
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co... 33 0.28
At5g61660.1 68418.m07736 glycine-rich protein 32 0.37
At5g46730.1 68418.m05757 glycine-rich protein 32 0.48
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 32 0.48
At2g05440.2 68415.m00575 glycine-rich protein 32 0.48
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 31 0.64
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 31 0.64
At2g05530.1 68415.m00585 glycine-rich protein 31 0.64
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 31 0.85
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 0.85
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 31 0.85
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 1.1
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 1.1
At1g11850.2 68414.m01364 expressed protein 31 1.1
At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to SP... 30 1.5
At4g29240.1 68417.m04182 leucine-rich repeat family protein / ex... 30 1.5
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 30 1.5
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00... 30 1.5
At1g11850.1 68414.m01363 expressed protein 30 1.5
At1g10830.1 68414.m01244 sodium symporter-related contains five ... 30 1.5
At3g15400.1 68416.m01954 anther development protein, putative si... 29 2.6
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 29 2.6
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 29 3.4
At4g30460.1 68417.m04325 glycine-rich protein 29 3.4
At4g29030.1 68417.m04151 glycine-rich protein glycine-rich prote... 29 3.4
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 3.4
At2g05440.1 68415.m00574 glycine-rich protein 29 3.4
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 3.4
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 29 4.5
At4g10330.1 68417.m01698 glycine-rich protein 29 4.5
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 4.5
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 4.5
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 4.5
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 29 4.5
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 29 4.5
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 28 6.0
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 6.0
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 6.0
At4g21620.1 68417.m03134 glycine-rich protein 28 6.0
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 28 6.0
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 28 6.0
At1g66820.1 68414.m07595 glycine-rich protein 28 6.0
At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing ... 28 6.0
At1g04800.1 68414.m00476 glycine-rich protein 28 6.0
At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family... 28 7.9
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 28 7.9
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 7.9
At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-contain... 28 7.9
At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kina... 28 7.9
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 28 7.9
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = +2
Query: 284 PTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNTCHIT*RSTLRFP 463
P +P PSP S + + +PS P HT S PS P P+ S H S P
Sbjct: 204 PATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHS--PAHAPSHSPAHAP 261
Query: 464 STFPRHTQS 490
S P H+ S
Sbjct: 262 SHSPAHSPS 270
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/67 (31%), Positives = 25/67 (37%)
Frame = +2
Query: 290 SPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNTCHIT*RSTLRFPST 469
SP P S + + TP+ P H S P P+P S H S PS
Sbjct: 177 SPAQPPKSSSPISHTPALSPSHATSHSPAT-----PSPSPKSPSPVSHSPSHSPAHTPSH 231
Query: 470 FPRHTQS 490
P HT S
Sbjct: 232 SPAHTPS 238
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 36.3 bits (80), Expect = 0.022
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +3
Query: 387 QGSRAPTLRGRQTRAISREGV-----R*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGA 551
+G R+P++ G +R+ SR R SR RSR+ + SR+ +S P +
Sbjct: 6 RGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRG 65
Query: 552 RAPALPSREAR---PLPRQGSSAPT 617
++PA P+R R P P +G+S+P+
Sbjct: 66 KSPAGPARRGRSPPPPPSKGASSPS 90
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 36.3 bits (80), Expect = 0.022
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +3
Query: 387 QGSRAPTLRGRQTRAISREGV-----R*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGA 551
+G R+P++ G +R+ SR R SR RSR+ + SR+ +S P +
Sbjct: 6 RGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPPRRG 65
Query: 552 RAPALPSREAR---PLPRQGSSAPT 617
++PA P+R R P P +G+S+P+
Sbjct: 66 KSPAGPARRGRSPPPPPSKGASSPS 90
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 34.7 bits (76), Expect = 0.069
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +1
Query: 151 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 282
N G G+G+DG G+ GH G GG Y GG+ G GGH
Sbjct: 67 NGGGGHGLDGYGGGHGGHYGGGGGHYG-GGGGHGGGGHYGGGGH 109
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 282
G+G G G G+G G GG Y G Y G G GGH
Sbjct: 62 GHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGGGGGHGGGGH 103
>At1g61255.1 68414.m06903 expressed protein
Length = 143
Score = 34.7 bits (76), Expect = 0.069
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 151 NLGYGYG-IDGLDV----GYIGHGQGLGGAYNYVDGGYSSGYGL 267
N GYG G GL G+I G G GG+Y+ + GGYS G G+
Sbjct: 48 NKGYGSGGYPGLTTEPATGFILPGSGPGGSYSELSGGYSKGRGV 91
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.3 bits (75), Expect = 0.091
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 381 SRQGSRAPTLRGRQ-TRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARA 557
SR+ SR+P+ RGR +++ SR R SR RSR SR + ++S ++ + +R+
Sbjct: 197 SRKDSRSPS-RGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRS 252
Query: 558 PALPSREARPLPRQGSSAPTLP 623
P S+ P PR+ S P
Sbjct: 253 PGPRSKSRSPSPRRSRSRSRSP 274
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.3 bits (75), Expect = 0.091
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 381 SRQGSRAPTLRGRQ-TRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARA 557
SR+ SR+P+ RGR +++ SR R SR RSR SR + ++S ++ + +R+
Sbjct: 197 SRKDSRSPS-RGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRS 252
Query: 558 PALPSREARPLPRQGSSAPTL 620
P S+ P PR+ + TL
Sbjct: 253 PGPRSKSRSPSPRRWITVETL 273
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.3 bits (75), Expect = 0.091
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 381 SRQGSRAPTLRGRQ-TRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARA 557
SR+ SR+P+ RGR +++ SR R SR RSR SR + ++S ++ + +R+
Sbjct: 197 SRKDSRSPS-RGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKAKSSRRSPAKSTSRS 252
Query: 558 PALPSREARPLPRQGSSAPTLP 623
P S+ P PR+ S P
Sbjct: 253 PGPRSKSRSPSPRRSRSRSRSP 274
>At1g27710.1 68414.m03387 glycine-rich protein
Length = 212
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +1
Query: 139 RGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
+G L G GYG G G G+G G GG + GG+ G G GG
Sbjct: 99 KGELTAG-GYGGGGPGYGGGGYGPGGGGGGVVIGGGFGGGAGYGSGG 144
>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
copper protein precursor (SP:Q41001) {Pisum sativum};
contains a Pfam PF02298: Plastocyanin-like domain
related to blue copper-binding protein; contains a
domain related to blue copper-binding protein
Length = 257
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +1
Query: 157 GYGYGIDGL-----DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHT 285
G+G+G G+ G G G G+G NY G SG G +GGH+
Sbjct: 84 GWGWGWGGVPNNTHSSGSGGSGWGMGPNNNYSSGSGGSGSGWGYGGHS 131
>At5g61660.1 68418.m07736 glycine-rich protein
Length = 134
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +1
Query: 157 GYGYGI-DGLDVGYIGHGQGLGGA----YNYVDGGYSSGYGLNFGG 279
GYGYG G GY G+G G GGA Y Y G SG G GG
Sbjct: 74 GYGYGSGSGSGTGY-GYGSGGGGARGGGYGYGSGNGRSGGGGGGGG 118
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 157 GYGYGIDGL-DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
GYG G +G G GHG G GGA + GGY+SG G GG
Sbjct: 72 GYG-GAEGYASGGGSGHGGGGGGAAS--SGGYASGAGEGGGG 110
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 282
GYG G G G G G+G GG+Y GG S G GGH
Sbjct: 242 GYGGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGGGH 283
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = +1
Query: 142 GLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
G+ + GYG G G G G G+G GG Y + GY+SG G GG
Sbjct: 47 GVSSGGYG-GESGGGYGG-GSGEGAGGGYGGAE-GYASGGGSGHGG 89
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
G YG G G G G G GG Y GG + GYG GG
Sbjct: 220 GGAYGGGGAHGGGYGSGGGEGGGYG---GGAAGGYGGGGGG 257
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGG-YSSGYGLNFG 276
GYG G G G G G G GG Y GG ++SGYG G
Sbjct: 111 GYG-GAAGGHAGGGGGGSGGGGGSAYGAGGEHASGYGNGAG 150
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 157 GYGYGIDGLDVGYI-GHGQGLGGAYNYVDGGYSSGYGLNFGG 279
G G G GY G G+G GG Y GG++ G G GG
Sbjct: 88 GGGGGGAASSGGYASGAGEGGGGGYGGAAGGHAGGGGGGSGG 129
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 157 GYGYGIDGLD----VGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
GYG G+ +GY G G GG YN GGYS G G +GG
Sbjct: 279 GYGGGVGPYRGEPALGYSGRYGGGGGGYNR--GGYSMGGGGGYGG 321
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
G GYG G+ G+G G+GGA GGY G G + GG
Sbjct: 346 GGGYGSSGIG----GYGGGMGGAGG---GGYRGGGGYDMGG 379
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 151 NLGYGYGIDGLDVGYIGHGQGLGGAYNY---VDGGYSSGYGLNFGG 279
N G GYG DG G+ G G GG Y GG S GYG +GG
Sbjct: 227 NFGGGYG-DGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYG-GYGG 270
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 282
GYG G+ G G G+ G G V GG + GYG GG+
Sbjct: 356 GYGGGMGGAGGG--GYRGGGGYDMGGVGGGGAGGYGAGGGGN 395
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDVTKTITLVKGV 321
G YG G G G G G GG Y GGY G G + GG + + + GV
Sbjct: 100 GGHYGGGGGHYGGGGGGHGGGGHYGGGGGGYGGGGGHHGGGGHGLNEPVQTKPGV 154
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGL-NFGG 279
G G G G D GY G G GG+Y GGY G G N GG
Sbjct: 24 GGGGGYGGGDAGYGGRGASGGGSYG-GRGGYGGGGGRGNRGG 64
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGL-NFGG 279
G G G G D GY G G GG+Y GGY G G N GG
Sbjct: 24 GGGGGYGGGDAGYGGRGASGGGSYG-GRGGYGGGGGRGNRGG 64
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 163 GYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 282
G+G +G GY G G G G + GGY+ G G N GGH
Sbjct: 44 GHGGNG---GYNGGG-GYNGGGGHNGGGYNGGGGYNGGGH 79
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 316 GVPVPYAVDRPVP---YPVEKHVPYPVKVAVPQPYE--VVKHVPYHVKEYVKVPV 465
G PY+ +P P YP P P+K P PYE VK+ P +K Y PV
Sbjct: 46 GPKFPYSPPKPPPIEKYPPPVQYPPPIKKYPPPPYEHPPVKYPP-PIKTYPHPPV 99
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYG 264
GYG G G GY G G+ GG Y DGG G G
Sbjct: 131 GYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGG 166
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
GY G G G G+G GG GGY G G ++GG
Sbjct: 124 GYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGG 164
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 31.1 bits (67), Expect = 0.85
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 465 PRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLP-RQGSSAPTLPRGETRA 641
P + AIP +S + S LP RA ALP P+ R+G +AP LP T A
Sbjct: 200 PGNAAIPVEPPLTMSAEKESYAPLPPPPGRA-ALPPPPPLPMAVRKGVAAPPLPPPGTAA 258
Query: 642 IP 647
+P
Sbjct: 259 LP 260
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +3
Query: 381 SRQGSRAPTLRGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPR--QGAR 554
SR SR+P+ ++R+ SR R S RSR++ K +++ ++L R +R
Sbjct: 201 SRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSR 260
Query: 555 APALPSREARPLPRQGSSAPTLPRGETRAIPRRS 656
+P+ P ++ P PR S + + R +R+ P +S
Sbjct: 261 SPS-PDKKKSP-PRAMSRSKSRSRSRSRS-PSKS 291
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +3
Query: 411 RGRQTRAISREGVR*GSRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPL 590
R + R+ SR GSR RS + P R + R S PR+ +R P+
Sbjct: 183 RYEKERSYSRSPPHNGSRVRSGS-PGRVKSHSRSPRRS--VSPRKNRSYTPEQARSQSPV 239
Query: 591 PRQGSSAPTLPRG 629
PRQ S +PRG
Sbjct: 240 PRQSRSPTPVPRG 252
>At1g11850.2 68414.m01364 expressed protein
Length = 108
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 142 GLLNLGYGYGID---GLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
GL LG G GI GL +G G G G GG GG+ G G GG
Sbjct: 58 GLGGLGIGAGIGAGAGLGLGGGGGGLGGGGGGLLGGGGFGGGAGGGLGG 106
>At5g66400.1 68418.m08374 dehydrin (RAB18) nearly identical to
SP|P30185 Dehydrin Rab18 {Arabidopsis thaliana}
Length = 186
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +1
Query: 115 PLEKKLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDVT 294
P++++ D+ G G GYG G G G G GG Y GG GYG G+ T
Sbjct: 19 PIQQQYDEYGNPMGGGGYGTGGGGGATGGQGYGTGG-QGYGSGG--QGYGTGGQGYGTGT 75
Query: 295 KT 300
T
Sbjct: 76 GT 77
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 276
G GYG G G G G G GG Y G + G+G G
Sbjct: 47 GQGYGTGGQGYGSGGQGYGTGG-QGYGTGTGTEGFGTGGG 85
>At4g29240.1 68417.m04182 leucine-rich repeat family protein /
extensin family protein contains Pfam PF00560: Leucine
Rich Repeat domains; similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana]
Length = 415
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 142 GLLNLGYGYGIDG-LDVGYIGHGQGLGGAYNYVDGGYSSGYGLN 270
GL+ +G+ G + VG IG G G GG +V GGY++G N
Sbjct: 22 GLVQTDASFGVGGGVGVG-IGGGGGGGGGGVWVGGGYNNGGNRN 64
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 217 GGAYNYVDGGYSSG-YGLNFGGHTDVTKTITLVKGVPVPYAVDRPVPYPVEKHV 375
G Y V G G + L GG T T T + + + PY P P PV+ H+
Sbjct: 212 GHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHI 265
>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
F-box domain
Length = 435
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +1
Query: 319 VPVPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPV 465
+P+P + P+P + H+ P+ +A+P P + +P + + +P+
Sbjct: 355 MPMPMPMPMPMPMHMHMHMHMPMPMAMPMPMPIAMAMPMPMPMPMPMPM 403
>At1g11850.1 68414.m01363 expressed protein
Length = 93
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 148 LNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
L LG G G+ GL IG G G G GG+ G G GG
Sbjct: 51 LGLGGGAGLGGLG---IGAGIGAGAGLGLGGGGFGGGAGGGLGG 91
>At1g10830.1 68414.m01244 sodium symporter-related contains five
transmembrane domains; Interpro IPR001991
Sodium:dicarboxylate symporter; EST gb|F13926 comes from
this gene
Length = 367
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 495 LFDWVWRGNVDGNLNVLLHVIWHVFDDLVGLGHGYLDGIRHV 370
L WV+ G V G + +L+V+W D+ G G ++D + ++
Sbjct: 93 LVSWVYFGVVLGVVLFILNVVW--IDNSTGFGKSFIDAVSNI 132
>At3g15400.1 68416.m01954 anther development protein, putative
similar to anther development protein ATA20 GB:AAC50042
GI:2708813 from [Arabidopsis thaliana]
Length = 416
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1
Query: 154 LGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 276
+G GYG G VGY G G G G + +G SSG G FG
Sbjct: 207 VGRGYGSGGSGVGY-GVGIGSSGGSGFGEGIGSSG-GNGFG 245
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = +1
Query: 127 KLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
K D+RG + G Y G G G+ QG GG Y G Y G G GG
Sbjct: 38 KPDQRGYGDNGGNYNNGGGYQGGGGNYQGGGGNYQGGGGNYQGGGGRYQGG 88
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 468
P P ++ P P PV K P K+ P P V K P ++ VPVH
Sbjct: 248 PKPPKIEHPPPVPVYKP---PPKIEKPPPVPVYKPPP-KIEHPPPVPVH 292
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTD 288
G G+G G G G G G G Y +GG GYG +GG D
Sbjct: 122 GGGHGGGGGGGGGRGGGGGSGNGEGYGEGG---GYGGGYGGGDD 162
>At4g29030.1 68417.m04151 glycine-rich protein glycine-rich protein
- Onobrychis viciifolia,PID:g2565429
Length = 115
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 157 GYGYGIDGL--DVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDV 291
G G G+ G ++GY G G GG + GG SG G GG + +
Sbjct: 54 GVGGGVSGPGGNLGYGGFGGAGGGLGGGLGGGAGSGLGGGLGGGSGI 100
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +1
Query: 157 GYGYGIDGLDVG--YIGHGQG-LGGAYNYVDGGYSS---GYGLNFGG 279
GYG G G + G Y +G G LGG N GYSS YG FGG
Sbjct: 247 GYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGG 293
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 163 GYGIDGLDV-GYIGHGQGLGGAYNYVDGGYSSGYGLNFGGHTDVTKTITLVKGV 321
GYG G G GH G GG Y GGY G G + GG + + + GV
Sbjct: 74 GYGGGGGHYGGGGGHYGGGGGHYGGGGGGYGGGGGHHGGGGHGLNEPVQTKPGV 127
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 151 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG---YGLNFGGH 282
N G G+G+DG G GH G GG Y G Y G YG GGH
Sbjct: 65 NGGGGHGLDGYGGGG-GHYGGGGGHYGGGGGHYGGGGGGYGGG-GGH 109
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 151 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDG--GYSSGYGLNFGG 279
N G G G G + Y G+ G GG Y G GYG NFGG
Sbjct: 158 NAGGGGGYGG-NSSYGGNAGGYGGNPPYSGNAVGGGGGYGSNFGG 201
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 190 GYIGHG-QGLGGAYNYVDGGY---SSGYGLNFGGH 282
G+ G G G GG Y DGGY + GYG GG+
Sbjct: 115 GFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGY 149
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 1192
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 175 DGLDVGYIGHGQGLGGAYNYVDGGYSS-GY 261
DG D G G G G GGA GYSS GY
Sbjct: 219 DGKDGGEAGKGSGPGGATGPPKAGYSSHGY 248
>At4g10330.1 68417.m01698 glycine-rich protein
Length = 130
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 148 LNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFG 276
L +G G+G +G +G G G+ G + G G G+ FG
Sbjct: 35 LGVGCGFGFGAGLIGGVGFGPGVPGLQFGLGFGAGCGIGVGFG 77
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 154 LGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 258
LG+G G G+ VG+ G+G G G AY++ Y+ G
Sbjct: 64 LGFGAGC-GIGVGF-GYGVGRGAAYDHSRSYYNVG 96
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 480 IPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSA 611
+ RKE + R + QA PRQ +AP+ PS A+P+ SS+
Sbjct: 378 VAERKEDRIKRLQQYFQAQPRQYTQAPSAPS-PAQPVLSYVSSS 420
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +1
Query: 145 LLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG------YSSGYGLN 270
LLN GY G + VG G+G + G ++ V G YSSGYG+N
Sbjct: 211 LLN-GYAQGFNPAAVG--GYGLRMDGRFSPVGAGRSGFANYSSGYGMN 255
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Frame = +1
Query: 145 LLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG------YSSGYGLN 270
LLN GY G + VG G+G + G ++ V G YSSGYG+N
Sbjct: 211 LLN-GYAQGFNPAAVG--GYGLRMDGRFSPVGAGRSGFANYSSGYGMN 255
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 151 NLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGG-YSSGY-GLNFGGH 282
+ G G G G G G G G GG Y GG Y GY G + GG+
Sbjct: 579 SFGSGRGGYGGGGGGYGGGGGYGGGGGYGGGGGYGGGYGGASSGGY 624
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +1
Query: 250 SSGYGLNFGGHTDVTKTITLVKGVPVPYAVDRPVPYPVEKHVPYPVKVAVP 402
S G G D + ++L P P + PVP+P E P PV P
Sbjct: 128 SGGNGWTESAANDPAREVSLA---PFPLQLTHPVPFPAEPGSPDPVSPPPP 175
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 163 GYGIDGLDVGYIGHGQGLGGAYNYVDGGY--SSGYGLNFGGH 282
G G G G G G G G Y GGY S GYG GG+
Sbjct: 122 GGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGY 163
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNY-VDGGY---SSGYGLNFGG 279
G GYG G GY G G GGA Y GGY + GYG N GG
Sbjct: 127 GGGYGGGG--GGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGG 169
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 279
GYG G G G G+G G GG GGY +GG
Sbjct: 142 GYGGGAGGYG-GSGGYGGGAGGYGGNSGGGYGGNAAGGYGG 181
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNY--VDGGYSSGYGLNFGGH 282
G GYG G GY G G GG+ Y GGY G +GG+
Sbjct: 134 GGGYGGSG---GYGGGAGGYGGSGGYGGGAGGYGGNSGGGYGGN 174
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 199 GHGQGLGGAYNYVDGGYSSGYGLNFGG 279
G G+G GG GGY G G ++GG
Sbjct: 74 GGGRGYGGGGRREGGGYGGGDGGSYGG 100
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 384 RQGSRAPTLRGRQTRAISREGVR*GSRP----RSRAIPSRKEGALSRTRTS*QALPRQGA 551
R+ SR+P+ R + R+ SR R SRP RSR++P + SR R+ ++ R
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEV 67
Query: 552 RAP 560
P
Sbjct: 68 ENP 70
>At4g21620.1 68417.m03134 glycine-rich protein
Length = 131
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 121 EKKLDKRGLLNLGYGYGIDGLDVGYI-GHGQGLGGAYNYVDGGYSSGYGLNFGG 279
E K G LG+G G+ G G+I G G G G V GGY G+G GG
Sbjct: 21 ESARQKSGNDGLGFG-GVPGS--GFIPGFGNGFPGTG--VGGGYGGGFGGPSGG 69
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 328 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 468
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 31 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 75
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 328 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 468
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 103 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 147
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 328 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 468
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 31 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 75
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +1
Query: 328 PYAVDRPVPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVPVH 468
P V P PV K P PVK P P V K P VK Y PV+
Sbjct: 103 PPPVKHYSPPPVYKSPPPPVKHYSPPP--VYKSPPPPVKHYSPPPVY 147
>At1g66820.1 68414.m07595 glycine-rich protein
Length = 109
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 154 LGYGYGIDGLDVGYIGHGQGLGGAYNYVD 240
LG+G G G+ G+ G+G G+GG Y++ D
Sbjct: 76 LGFGIGC-GIGFGF-GYGFGVGGGYSFDD 102
>At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing
protein
Length = 209
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIG 201
GYGYG++ + +GY+G
Sbjct: 148 GYGYGLEEMSIGYLG 162
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 258
G+G GI G G+ G G G GGA VDGG+ G
Sbjct: 81 GFGGGIGG---GFGGGGFG-GGAGKGVDGGFGKG 110
>At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays] gi|4007865|emb|CAA10387
Length = 343
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 316 GVPVPYAVDRP--VPYP-VEKHVPYPVKVAVPQPYEVVKHVPYHVKE 447
G P+P + + P +P+P +E P P+ VP P + V VP+ +E
Sbjct: 74 GKPLPASSNDPPQLPHPPLETATPTPLPPPVPVPVKQVTSVPFDWEE 120
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = +1
Query: 157 GYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSGYGLNFGGH 282
G GYG G GY G G G GG GG S Y GH
Sbjct: 155 GGGYGGGG---GYGGGGGGYGGGGRGGGGGGGSCYSCGESGH 193
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 384 RQGSRAPTLRGRQTRAISREGVR*GSRP----RSRAIPSRKEGALSRTRT 521
R+ SR+P+ R + R+ SR R SRP RSR++P + SR R+
Sbjct: 8 RRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRS 57
>At3g54800.1 68416.m06064 pleckstrin homology (PH) domain-containing
protein / lipid-binding START domain-containing protein
contains Pfam profiles PF00169: Pleckstring homology
(PH) domain, PF01852: Lipid-binding START domain
Length = 733
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Frame = -2
Query: 552 EHLDGVRPV-------NWYVYGI--RHLLFDWVWRGNVDGNLNVLLHVIWH 427
EHLDG + +W +G+ R LL WR DG +L H ++H
Sbjct: 249 EHLDGHTDIIHLQLYSDWLPWGMNRRDLLLRRYWRREDDGTYVILCHSVYH 299
>At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 769
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 127 KLDKRGLLNLGYGYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSG 258
K+ RG+++ G +G + + HG G+ Y Y DGG+ G
Sbjct: 139 KMSGRGVMSWANGDLFNGFWLNGLRHGSGV---YKYADGGFYFG 179
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 88 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 138
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 116 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 166
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 144 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 194
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 172 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 222
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 200 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 250
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 228 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 278
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 256 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 306
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 284 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 334
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 312 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 362
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 322 PVPYAVDRPVPYPVEKHVPYPVKVAVPQP--YEVVKHVPYHVKEYVKVPVH 468
P + V + P PV+ + P PV + P P + V K P VK Y PV+
Sbjct: 340 PKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 390
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,785,482
Number of Sequences: 28952
Number of extensions: 318819
Number of successful extensions: 1504
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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