Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1052
         (621 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.1  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  ISLVQCRTIYLELNSPTLDE 81
           ++ VQCR+I  E   PT DE
Sbjct: 77  VARVQCRSIKNECPEPTCDE 96


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 527 PGPSKGNPSPWLPEAK*TCMSALP 456
           P PS  +P P LP A   C + LP
Sbjct: 153 PNPSIIDPGPALPPAGFLCNNYLP 176


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 64  SPTLDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVK 174
           +P L  +   L  GY+  D+ G G  Y  + ++EAV+
Sbjct: 117 APNLTYLLVALYSGYVWTDILGFG--YFREYLAEAVQ 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,497
Number of Sequences: 336
Number of extensions: 3887
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)