Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1052
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 28 1.3
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 27 2.2
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 3.8
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 25 6.7
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 25 6.7
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 8.8
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 8.8
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 25 8.8
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 8.8
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -1
Query: 621 VFRYIRLNSPGFVIIKMYIAEWRWKRVGHYSTRAIEGEPVSMVAGSEINLYVRFAFI*FR 442
+ + +R +P + + + +W +GH ++ ++ +PV V+ S
Sbjct: 394 IMQQVRPETPNSPRLNSTVIQSKWDSLGHTASPKMQTQPVRSVSQSSATTETNVKPTKEE 453
Query: 441 EVEVPVGRP-YLQTIL 397
+VPV P YL+ ++
Sbjct: 454 NADVPVSSPDYLKDLV 469
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 336 HLQTPEWFKYNEQGSHRKASREWFGG 413
HL + KYN +HR AS W+ G
Sbjct: 141 HLSSSSLSKYNHHSNHRLASPGWWYG 166
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 98 NMDTYRKIWPELATL 142
N+DT R++WPEL +
Sbjct: 469 NLDTIRRLWPELGRM 483
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 6.7
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -2
Query: 338 VTSRLFHPSCIIYLRFLACESSSISFKPHLFLLNNCLVGTSS-TPVCGSPAKACIF---L 171
+T++ FH CI+ L+ S+ KP +F + + T +C SPA+ C+F L
Sbjct: 412 ITAKSFH-KCILLLK---TGFSAPLIKPSVFSGSKWVENMRLLTDLCKSPAQKCLFSNLL 467
Query: 170 TASEIDC 150
TA+ C
Sbjct: 468 TATRKFC 474
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 319 WNKREVTYR-LLNGSSTMSKDRIERLLENGLEVW 417
W E+ R ++ SST + +E+ NGLE W
Sbjct: 491 WIFEEIEARQFIDKSSTQRLEMLEQYCNNGLEYW 524
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 6.7
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 352 NGSSTMSKDRIERLLENGLE-VWAPHGNLHFTKLDEGKADIQVYFASGNHGDGFPFDGPG 528
NG+ST E L + G+ V+ P G H K + + DI VYF + HG D
Sbjct: 322 NGAST------EYLQDLGITTVFTPTGVKHLHKAAK-EFDIGVYFEANGHGTVLFSDKAL 374
Query: 529 RVVAHAFPPP 558
+AH F P
Sbjct: 375 ANLAHPFFTP 384
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 352 NGSSTMSKDRIERLLENGLE 411
N S +++ DRI R +EN L+
Sbjct: 38 NSSKSLNNDRISRTIENSLQ 57
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 71 RLTRLIFCYNMDTYRKIWPELATLTRHNLFPKLS 172
R R +FC MD+ +K+ L T T + + P S
Sbjct: 174 RCYRSLFCKKMDSLKKLVSFLLTETENAILPPKS 207
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 8.8
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +1
Query: 289 RNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIE----RLLENGLEVWAPHGNLHFTKLDE 456
RN+ ++ + K+E R +GSS S ++ +LL +GLE + F + +
Sbjct: 272 RNKSVLVYDLRTKKECVQRFYHGSSICSMQNLDFSQPKLLVSGLESKISLYDCRFLQSKK 331
Query: 457 GKADIQVYFASGN 495
I Y N
Sbjct: 332 RPQSIMSYMGHSN 344
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -2
Query: 431 FPWGAHTSKPFSRSLSMRSLLI-VLEPFRSL*VTSRLF---HPSCII 303
F W HT++PF ++ ++ LL ++ F++L R+ H S ++
Sbjct: 33 FTWDHHTARPFWTAIKVQPLLANEVQTFKALITIHRVLQEGHKSALV 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,916
Number of Sequences: 5004
Number of extensions: 63345
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -