Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1052
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0697 - 30999644-31000762 80 2e-15
10_08_0900 - 21436508-21437521 75 5e-14
06_01_0940 + 7235801-7236916 75 6e-14
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 56 3e-08
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 31 0.56
12_02_1061 - 25756366-25757567,25758692-25758797 29 2.3
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 29 3.9
03_02_0018 - 5016752-5017288 29 3.9
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 5.2
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 28 5.2
12_02_0904 - 24181766-24181809,24181888-24182066,24182424-241824... 23 6.5
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160... 27 9.1
04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595... 27 9.1
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 27 9.1
>02_05_0697 - 30999644-31000762
Length = 372
Score = 79.8 bits (188), Expect = 2e-15
Identities = 62/196 (31%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Frame = +1
Query: 85 NFLLQYGYLSKDLAGVGYTYT-SQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGL 261
++L +GYL + Y+ S+ A+ Q GL TG LD T RCG+
Sbjct: 67 DYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQMVAPRCGV 126
Query: 262 KDI-------DEDSHA---RNRR-YIIQEG---WN--KREVTYRLLNGSST-MSKDRIER 390
D+ D +S A R R Y G W +R + Y + S+T + + +
Sbjct: 127 ADVINGTSTMDRNSSAAALRGRHLYSYFPGGPMWPPFRRNLRYAITATSATSIDRATLSA 186
Query: 391 LLENGLEVWAPHGNLHFTKLDEGK-ADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGD 567
+ WA L FT++ ADI + F SG+HGDG FDGP +AHAF P G
Sbjct: 187 VFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAFSPTDGR 246
Query: 568 IHFDDDETWGVESDIS 615
H D E W D+S
Sbjct: 247 FHLDAAEAWVASGDVS 262
>10_08_0900 - 21436508-21437521
Length = 337
Score = 74.9 bits (176), Expect = 5e-14
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 21/196 (10%)
Frame = +1
Query: 88 FLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD 267
+L ++GY++K + + + AV++ Q LP TG LD T RCG+ D
Sbjct: 42 YLARFGYMAKPGRDTTDAF-DEHLEVAVRRYQTRFSLPVTGRLDNATLDQIMSPRCGVGD 100
Query: 268 IDED---SHARN--------RRYIIQEG---WNKRE----VTYRLLNGSST--MSKDRIE 387
D + S A + R+ +G W + + ++Y + ++ + +
Sbjct: 101 DDVERPVSVALSPGAQGGVVSRFTFFKGEPRWTRSDPPIVLSYAVSPTATVGYLPPAAVR 160
Query: 388 RLLENGLEVWAPHGNLHFTKLDEGKA-DIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLG 564
+ + WA + F + D+ +A DI+V F +GNHGDG PFDGP ++ HAF P G
Sbjct: 161 AVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAFSPKNG 220
Query: 565 DIHFDDDETWGVESDI 612
+H D E W V+ D+
Sbjct: 221 RLHLDASEHWAVDFDV 236
>06_01_0940 + 7235801-7236916
Length = 371
Score = 74.5 bits (175), Expect = 6e-14
Identities = 59/196 (30%), Positives = 84/196 (42%), Gaps = 19/196 (9%)
Frame = +1
Query: 85 NFLLQYGYLS----KDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKR 252
++L +GYLS L+ + A+K Q GL TG LD T R
Sbjct: 67 DYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVSQMMAPR 126
Query: 253 CGLKDIDEDSHA-------RNRR-YIIQEG---WNKREVTYRL-LNGSSTMSKDR--IER 390
CG+ D+ + R R Y G W + T R + +S S DR + +
Sbjct: 127 CGVADVVNGTSTMGGGGGVRGRGLYSYFPGSPRWPRSRTTLRYAITATSQTSIDRATLSK 186
Query: 391 LLENGLEVWAPHGNLHFTKL-DEGKADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGD 567
+ + W+ L+FT+ ADI + F G+HGDG FDGP +AHAF P G
Sbjct: 187 VFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAFSPTNGR 246
Query: 568 IHFDDDETWGVESDIS 615
+H D E W D++
Sbjct: 247 LHLDASEAWVAGGDVT 262
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +1
Query: 460 KADIQV-YFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGVE 603
+ADI+V ++ +G HGDG PFDGP V AHA P G I FD E W V+
Sbjct: 116 EADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPEDGRIDFDAAERWAVD 164
Score = 31.1 bits (67), Expect = 0.74
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Frame = +1
Query: 319 WNKREV--TYRL--LNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDE-GKADIQVYF 483
WN+ ++ TY + L + + +D + + L WA L F + +ADI+V F
Sbjct: 679 WNRPDMRLTYAVSPLATADHLPRDAVREAFRSALARWAEVTPLRFAEAARYEEADIRVGF 738
Query: 484 ----ASGN-HGDGFPFDGPGR-VVAHAFPPPLGDIHFDDDETWGV 600
A G G G G +AHA PP G IH W V
Sbjct: 739 YLHTADGKCDACGCVCKGGGEEALAHAHPPQDGRIHLHAARKWAV 783
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 31.5 bits (68), Expect = 0.56
Identities = 32/126 (25%), Positives = 56/126 (44%)
Frame = +1
Query: 73 LDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKR 252
L + L+ + + +A VG + S+ E +QA AG G L +L +
Sbjct: 870 LINLRHLIDHEEVHSAIASVG---SLTSLQELTFNVQA-AGNFSIGQLS-SMNELVTLRI 924
Query: 253 CGLKDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGN 432
C L+++ + A++ R+I +E T+ N S S+ E+ ++ LE PH N
Sbjct: 925 CQLENVKSEEEAKSARFIDKEHLEALSFTW---NDLSMTSEPTAEKTTDDVLEGLEPHHN 981
Query: 433 LHFTKL 450
L +L
Sbjct: 982 LKHLQL 987
>12_02_1061 - 25756366-25757567,25758692-25758797
Length = 435
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 474 SLFRFRQPWRRVPLRWPWSSSGPRVSTAT 560
S+ RF P +P+R P ++ GP VSTA+
Sbjct: 396 SVLRFEAPLPSLPVRMPVATYGPPVSTAS 424
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 283 HARNR--RYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHF 441
H RN + +++EG N + S KD IE LENG+ W + +H+
Sbjct: 107 HGRNLFLQSLVEEGQNPSTSNGGSNSQKSVEYKDLIE-CLENGINFWTDYSKVHY 160
>03_02_0018 - 5016752-5017288
Length = 178
Score = 28.7 bits (61), Expect = 3.9
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Frame = -3
Query: 568 YRRVAVETRGPLLDQGHRRGTRLHGCRKRNKLVCPLCLHLVS-------*SGGSRGAPIP 410
YRR+ GP LD+ R G + R +L L L L S GG GA
Sbjct: 103 YRRLYRLCLGPALDRLGRGGGAIAHAHARARLSLSLSLSLFSIDCYERLGGGGGAGAGRQ 162
Query: 409 PNHSLEAFLCDP 374
P S FLC P
Sbjct: 163 PQPSSLLFLCKP 174
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 436 GGSRGAPIPPNHSLEAFLCDPCSLYLNHSGVCK 338
GGS+GA PP + + CD CS+ + G+ +
Sbjct: 96 GGSKGAA-PPARDIRRYKCDFCSVVRSKKGLIR 127
>04_04_1242 - 32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 378 SHRKASRE-WFGGMGAPREPPLHET 449
S RK SR+ FG +G PR P LH T
Sbjct: 1144 SPRKLSRQNSFGSIGTPRTPNLHST 1168
>12_02_0904 -
24181766-24181809,24181888-24182066,24182424-24182464,
24182829-24182860,24183816-24184140
Length = 206
Score = 23.4 bits (48), Expect(2) = 6.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 367 LYLNHSGVCK*PRVYSILLV*YICDFLRASLHLYLSNR 254
+YL G+C + + +V +C F+ + Y+SN+
Sbjct: 142 IYLLDKGICMTNPPHLLTVVKKVCSFITWDGYQYMSNQ 179
Score = 23.0 bits (47), Expect(2) = 6.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 517 RRGTRLHGCRKRNKLVCPLC 458
RRG LHG R+R+ P C
Sbjct: 83 RRGGALHGVRRRDGGEAPGC 102
>10_01_0132 -
1601421-1601657,1601761-1601922,1602812-1603721,
1604587-1604651,1604704-1604746,1605086-1605128,
1605874-1605955,1606270-1606464,1606567-1606721,
1611207-1611435,1611538-1611693,1612539-1613476,
1614946-1614967
Length = 1078
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 43 TIYLELNSPTLDEVNFLLQYGYLSKDLAG 129
T++L+ NSP L+++ + GY +KD+ G
Sbjct: 354 TVFLQ-NSPKLEKLRLEIDEGYTAKDIKG 381
>04_04_1224 +
31858110-31858338,31859180-31859301,31859398-31859507,
31859661-31859725,31859940-31860004,31860387-31860632,
31861212-31861313,31861484-31861534,31862015-31862105,
31862777-31862841
Length = 381
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -2
Query: 545 AWATTRPGPSKGNPSPWLPEA---K*TCMSALP 456
A A RP S +PSP LPEA CM LP
Sbjct: 20 AAAAQRPSSSSSSPSPSLPEALLLATVCMVGLP 52
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +1
Query: 31 VQCRTIYLELNSPTLD---EVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAF 189
V C+ +Y EL + TL +VNF+L L K+ + ++ISEA+K++ F
Sbjct: 148 VGCKLVY-ELFTDTLTSRLKVNFVLGACILKKERKKKWDEHNQEAISEALKQLNEF 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,604,322
Number of Sequences: 37544
Number of extensions: 437486
Number of successful extensions: 1202
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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