Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1052
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta...    88   5e-18
At2g45040.1 68415.m05607 matrix metalloproteinase nearly identic...    78   4e-15
At1g59970.1 68414.m06755 matrixin family protein similar to SP|P...    76   2e-14
At1g24140.1 68414.m03045 matrixin family protein similar to matr...    74   9e-14
At1g70170.1 68414.m08074 matrixin family protein similar to SP|P...    71   8e-13
At1g74290.1 68414.m08603 esterase/lipase/thioesterase family pro...    29   1.9  
At1g08810.2 68414.m00980 myb family transcription factor (MYB60)       29   1.9  
At1g08810.1 68414.m00981 myb family transcription factor (MYB60)       29   1.9  
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,...    29   2.5  
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil...    29   2.5  
At1g54420.1 68414.m06208 hypothetical protein                          29   3.3  

>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
           metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 364

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
 Frame = +1

Query: 88  FLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD 267
           +L ++GY++ D + +        +  A+   Q   GLP TG LD  T  L    RCG+ D
Sbjct: 76  YLHRFGYVN-DGSEIFSDVFDGPLESAISLYQENLGLPITGRLDTSTVTLMSLPRCGVSD 134

Query: 268 ----IDEDSHARNRRYIIQEG---WNKREVTYRLLNGSST--MSKDRIERLLENGLEVWA 420
               I+ D       Y    G   WN+  +TY +        ++ + ++ +       W+
Sbjct: 135 THMTINNDFLHTTAHYTYFNGKPKWNRDTLTYAISKTHKLDYLTSEDVKTVFRRAFSQWS 194

Query: 421 PHGNLHFTKLDE-GKADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWG 597
               + F ++D+   AD+++ F +G+HGDG PFDG    +AHAF P  G +H D  ETW 
Sbjct: 195 SVIPVSFEEVDDFTTADLKIGFYAGDHGDGLPFDGVLGTLAHAFAPENGRLHLDAAETWI 254

Query: 598 VESDI 612
           V+ D+
Sbjct: 255 VDDDL 259


>At2g45040.1 68415.m05607 matrix metalloproteinase nearly identical
           to metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 342

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 59/185 (31%), Positives = 85/185 (45%), Gaps = 12/185 (6%)
 Frame = +1

Query: 91  LLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDI 270
           L QYGYL ++           S  +A+ + Q   GLP TG  D  T       RCG  D 
Sbjct: 57  LQQYGYLPQNKES-----DDVSFEQALVRYQKNLGLPITGKPDSDTLSQILLPRCGFPDD 111

Query: 271 DEDSHA---RNRRYIIQEG---WNKR---EVTYRLLNGSST--MSKDRIERLLENGLEVW 417
            E   A     ++Y+   G   W +    ++TY     + T  ++   I R+       W
Sbjct: 112 VEPKTAPFHTGKKYVYFPGRPRWTRDVPLKLTYAFSQENLTPYLAPTDIRRVFRRAFGKW 171

Query: 418 APHGNLHFTKLDEGK-ADIQVYFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETW 594
           A    + F + ++   ADI++ F +G+HGDG PFDG   V+AH F P  G +H D  ETW
Sbjct: 172 ASVIPVSFIETEDYVIADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLDKAETW 231

Query: 595 GVESD 609
            V+ D
Sbjct: 232 AVDFD 236


>At1g59970.1 68414.m06755 matrixin family protein similar to
           SP|P29136 Metalloendoproteinase 1 precursor (EC
           3.4.24.-) (SMEP1) {Glycine max}; contains InterPro
           accession IPR001818: Matrixin
          Length = 360

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
 Frame = +1

Query: 157 ISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKDIDEDSHARN--------RRYIIQ 312
           +  A+   Q    L  TG LD  T +   + RCG  D+ +     N         +Y   
Sbjct: 87  LQSAINTYQKNFNLKVTGKLDSSTLRQIVKPRCGNPDLIDGVSEMNGGKILRTTEKYSFF 146

Query: 313 EG---W--NKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDEG-KADIQ 474
            G   W   KR++TY     ++    D ++R+       WA    L+FT+ +   +ADI 
Sbjct: 147 PGKPRWPKRKRDLTYAFAPQNNLT--DEVKRVFSRAFTRWAEVTPLNFTRSESILRADIV 204

Query: 475 VYFASGNHGDGFPFDGPGRVVAHAFPPPLGDIHFDDDETW 594
           + F SG HGDG PFDG    +AHA  PP G +H D DE W
Sbjct: 205 IGFFSGEHGDGEPFDGAMGTLAHASSPPTGMLHLDGDEDW 244


>At1g24140.1 68414.m03045 matrixin family protein similar to matrix
           metalloproteinase [Cucumis sativus] GI:7159629; contains
           InterPro accession IPR001818: Matrixin
          Length = 384

 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = +1

Query: 322 NKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDE-GKADIQVYFASGNH 498
           N+R++TY   +  + ++++ ++ +       W     L FT+++    +DI + F SG H
Sbjct: 171 NRRDLTYAF-DPRNALTEE-VKSVFSRAFTRWEEVTPLTFTRVERFSTSDISIGFYSGEH 228

Query: 499 GDGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGVESD 609
           GDG PFDGP R +AHAF PP G  H D +E W V  +
Sbjct: 229 GDGEPFDGPMRTLAHAFSPPTGHFHLDGEENWIVSGE 265


>At1g70170.1 68414.m08074 matrixin family protein similar to
           SP|P29136 Metalloendoproteinase 1 precursor (EC
           3.4.24.-) (SMEP1) {Glycine max}; contains InterPro
           accession IPR001818: Matrixin
          Length = 378

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
 Frame = +1

Query: 88  FLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDVPTKQLFKRKRCGLKD 267
           +  ++GY+ +  +G         +  AV+  Q    L  TG LD  T Q     RCG  D
Sbjct: 65  YFQRFGYIPETFSGNFTDDFDDILKAAVELYQTNFNLNVTGELDALTIQHIVIPRCGNPD 124

Query: 268 IDEDS---HARNR----------------RYIIQEG---W--NKREVTYRLLNGSSTMSK 375
           +   +   H   R                RY +  G   W  N+R++TY   +  + +++
Sbjct: 125 VVNGTSLMHGGRRKTFEVNFSRTHLHAVKRYTLFPGEPRWPRNRRDLTYAF-DPKNPLTE 183

Query: 376 DRIERLLENGLEVWAPHGNLHFTKLDE-GKADIQVYFASGNHGDGFPFDGPGRVVAHAFP 552
           + ++ +       W+    L+FT  +    +DI + F +G+HGDG PFDG    +AHAF 
Sbjct: 184 E-VKSVFSRAFGRWSDVTALNFTLSESFSTSDITIGFYTGDHGDGEPFDGVLGTLAHAFS 242

Query: 553 PPLGDIHFDDDETWGVESDI 612
           PP G  H D DE W V  D+
Sbjct: 243 PPSGKFHLDADENWVVSGDL 262


>At1g74290.1 68414.m08603 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
           esterase/lipase/thioesterase family
          Length = 371

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 330 RGHLQTPEWFKYNEQGSHRKASREWFGGMGAPREPPL 440
           RG+ + P W +  +QG H   +R+   G G     PL
Sbjct: 260 RGYTRKPHWAEVRQQGIHESINRDMIVGFGNWEFDPL 296


>At1g08810.2 68414.m00980 myb family transcription factor (MYB60)
          Length = 197

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +1

Query: 259 LKDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLH 438
           L   D D  +R+    +Q    +  + +R    SST   + I RLLE  +   +P  +  
Sbjct: 33  LNKSDSDERSRSENIALQTSSTRNTINHRSTYASST---ENISRLLEGWMRA-SPKSSTS 88

Query: 439 FTKLDEGKADIQVYFASGNHGDGFPFD 519
            T L E K   +      +H D FP++
Sbjct: 89  TTFL-EHKMQNRTNNFIDHHSDQFPYE 114


>At1g08810.1 68414.m00981 myb family transcription factor (MYB60)
          Length = 280

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +1

Query: 259 LKDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLH 438
           L   D D  +R+    +Q    +  + +R    SST   + I RLLE  +   +P  +  
Sbjct: 116 LNKSDSDERSRSENIALQTSSTRNTINHRSTYASST---ENISRLLEGWMRA-SPKSSTS 171

Query: 439 FTKLDEGKADIQVYFASGNHGDGFPFD 519
            T L E K   +      +H D FP++
Sbjct: 172 TTFL-EHKMQNRTNNFIDHHSDQFPYE 197


>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 932

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 307 IQEGWNKREVTYRLLNGSSTMSKDRIERLLE---NGLEVW 417
           IQE W   E+    + GSS ++  R+  +LE    GL +W
Sbjct: 256 IQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIW 295


>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
           3 (VLN3) [Arabidopsis thaliana] GI:3415117
          Length = 965

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 235 LFKRKRCGLKDIDEDSHARNRRYIIQEGWNKREVTYRLLNGSSTMSKDRIERL 393
           L K++  GLK + + +        + EG  K EV Y   N  + +SKD + +L
Sbjct: 363 LLKQQGVGLKGLSKSTPVNEDIPPLLEGGGKLEVWYIDANSKTVLSKDHVGKL 415


>At1g54420.1 68414.m06208 hypothetical protein
          Length = 120

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = -2

Query: 398 SRSLSMRSL--LIVLEPFRSL*VTSRLFHPSCIIYLRFLACESSSISFKPHLFLLNNCLV 225
           S S S RSL  L+VL+  RSL  +S     S ++ L+ L C SSS S  P    L   L+
Sbjct: 23  SSSSSARSLAPLLVLKLIRSLSSSSARLQASQLV-LKLL-CSSSSSSACPQALQLALKLL 80

Query: 224 GTSSTPVCGSPAKACIFLTAS 162
             SS+   G  A   +F  +S
Sbjct: 81  CWSSSSSTGPQAPQLVFKLSS 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,863,833
Number of Sequences: 28952
Number of extensions: 344186
Number of successful extensions: 966
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)