Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1051
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    29   0.82 
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   3.3  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    26   5.8  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +2

Query: 527 NVNFNKVALGLRAVSSRITPIK*LFSSTI 613
           N NF+  ALG+  +SS+I+PI+ ++S+ +
Sbjct: 2   NSNFSYPALGVDGISSQISPIRDVWSTNL 30


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 504 FNDLIRR*NILY*LELYFKIIKVVPNLFSFKFITKIITPIVQLRIGGLHGRTTI 343
           F D++     L  LE  ++II+ +   FS +   ++ TPI+    GG   R  I
Sbjct: 191 FVDMMSNTKSLELLEKRYRIIESIRKFFSERGFLEVETPILSHHFGGATARPFI 244


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 83  LDSTGRMSNF*IWWVFFTLLLKTFVRF 3
           LDS     N  +WW FFT +   F  F
Sbjct: 240 LDSHDLTPNLGLWWYFFTEMFNEFRTF 266


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 207 HRSIVKGNIVQMTSVVLDNFLRSVCPGA 124
           +RSI +G I   T  ++D F R V PG+
Sbjct: 92  NRSIKEGIICNFTRSIIDPFSRIVLPGS 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,665
Number of Sequences: 5004
Number of extensions: 45695
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)