Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1051
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.5  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   8.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   8.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 239 SNKKCNRYATFIDQSLRET*FR*HRWYSIISLDQSVRARTLTMSCKHEYIQSLDSTGR 66
           S+  C  Y  F  QSL +       W +++S+        L +      IQSLDS+ R
Sbjct: 335 SHMLCIGYGRFPPQSLTDM------WLTMLSMISGATCYALFLGHATNLIQSLDSSRR 386


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 239 SNKKCNRYATFIDQSLRET*FR*HRWYSIISLDQSVRARTLTMSCKHEYIQSLDSTGR 66
           S+  C  Y  F  QSL +       W +++S+        L +      IQSLDS+ R
Sbjct: 303 SHMLCIGYGRFPPQSLTDM------WLTMLSMISGATCYALFLGHATNLIQSLDSSRR 354


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 403 ENNYTNCSITDRRSTRAYN 347
           E N TN SIT+     AYN
Sbjct: 7   ETNITNSSITETYFVSAYN 25


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 432 PNLFSFKFITKIITPIVQLRIGGLHGRTTICV 337
           PN+       KI  P    R+G L  +  +CV
Sbjct: 55  PNVVPKPLCIKICAPGCVCRLGYLRNKKKVCV 86


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 432 PNLFSFKFITKIITPIVQLRIGGLHGRTTICV 337
           PN+       KI  P    R+G L  +  +CV
Sbjct: 55  PNVVPKPLCIKICAPGCVCRLGYLRNKKKVCV 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,860
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)