Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1050
         (719 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.33 
UniRef50_Q29JW2 Cluster: Sodium/hydrogen exchanger; n=1; Drosoph...    37   0.44 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   2.3  
UniRef50_Q8IPJ4 Cluster: Sodium/hydrogen exchanger; n=9; Endopte...    34   3.1  
UniRef50_Q2SSX4 Cluster: Putative uncharacterized protein; n=2; ...    34   4.1  
UniRef50_Q01H67 Cluster: DYM_CHICK Dymeclin; n=2; Ostreococcus|R...    33   9.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.33
 Identities = 19/26 (73%), Positives = 19/26 (73%)
 Frame = +3

Query: 639 SVGSRF*SGGRFCEARLLLGFVLATS 716
           S  SRF S GRFCEA LLLG VLA S
Sbjct: 82  SQSSRFRSDGRFCEALLLLGLVLANS 107



 Score = 35.1 bits (77), Expect = 1.8
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -2

Query: 508 GRFCEALLLARASVSKFSQVESVSLPTSPREAGIA 404
           GRFCEALLL    ++   ++    LP  PR AGIA
Sbjct: 91  GRFCEALLLLGLVLANSLRLSPYELPNRPRVAGIA 125


>UniRef50_Q29JW2 Cluster: Sodium/hydrogen exchanger; n=1; Drosophila
           pseudoobscura|Rep: Sodium/hydrogen exchanger -
           Drosophila pseudoobscura (Fruit fly)
          Length = 641

 Score = 37.1 bits (82), Expect = 0.44
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 61  SKQTNKQIFPLYNISID*YRFSYNGVLVFFLSKHCFLVFLKNTVVFML 204
           S+Q  KQIF L N   + + FSY GV +F   KH F   L+  + F L
Sbjct: 366 SRQRTKQIFELLNFLAENFIFSYIGVSMFTFPKHHFDAGLRGAMSFAL 413


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +2

Query: 566 SLETKGSTSKLTH*HSPLSFSPDLLSGVAF 655
           SL+T G +++  H   PLSFSPDLLSG  F
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRF 409


>UniRef50_Q8IPJ4 Cluster: Sodium/hydrogen exchanger; n=9;
           Endopterygota|Rep: Sodium/hydrogen exchanger -
           Drosophila melanogaster (Fruit fly)
          Length = 751

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 61  SKQTNKQIFPLYNISID*YRFSYNGVLVFFLSKHCF 168
           S+Q  KQIF L N   + + FSY GV +F   KH F
Sbjct: 422 SRQRTKQIFELLNFLAENFIFSYIGVSMFTFPKHHF 457


>UniRef50_Q2SSX4 Cluster: Putative uncharacterized protein; n=2;
           Mycoplasma|Rep: Putative uncharacterized protein -
           Mycoplasma capricolum subsp. capricolum (strain
           California kid / ATCC27343 / NCTC 10154)
          Length = 317

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 138 SSFFFVEALLFSFSKKYSCFYVTGDSK*TVYYLIKYSHNSL 260
           + F FV+  LF  SK  S FY+  D   ++Y L+KY  N++
Sbjct: 176 ADFEFVKDELFHSSKNNSLFYIREDGALSIYSLLKYYRNNV 216


>UniRef50_Q01H67 Cluster: DYM_CHICK Dymeclin; n=2; Ostreococcus|Rep:
           DYM_CHICK Dymeclin - Ostreococcus tauri
          Length = 767

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -3

Query: 582 PFVSSDGFDENGDRCLRYLKAPDLVVDSVKHCSLLGLVSANSLR 451
           P +  DG D++  R  R LKA + V++S +  S  G  SA+ LR
Sbjct: 2   PEMDDDGVDDDARRARRGLKARETVMESERRTSTSGRESASELR 45


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,536,263
Number of Sequences: 1657284
Number of extensions: 11262909
Number of successful extensions: 25572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25569
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)