Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1050
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0078 + 31505126-31507933                                         28   6.5  
03_06_0294 + 32893050-32893340,32894540-32895322                       28   8.6  

>03_06_0078 + 31505126-31507933
          Length = 935

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 476 PSKEQCFTESTTRSGAFRYLKHRSPFSSNPSLET 577
           P  E C   + +R  AFR L    PF +N  L T
Sbjct: 214 PESEYCLVFTVSRGSAFRLLAECYPFGTNKRLLT 247


>03_06_0294 + 32893050-32893340,32894540-32895322
          Length = 357

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = +2

Query: 341 WSHK*SSLVIFSPYPFASSVRG-YSSFSRTGR*AYGLDLREFADTSPSKEQCFTESTTRS 517
           WS   +S V++ P+ F + +   Y   +        L+   F    P K +   E   R 
Sbjct: 58  WSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRG 117

Query: 518 GA--FRYLKHRSPFSSNPSLETKGSTSKLTH 604
                + +K R P +S+PS ++ GS  ++ H
Sbjct: 118 QKHLLKSIKRRKPPNSSPSQQSLGSFLEVGH 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,014,428
Number of Sequences: 37544
Number of extensions: 288736
Number of successful extensions: 668
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)