Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1047
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   3.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   3.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.4  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 279 INI-SLSIKYMYFLYGYKISSKSDAWFSSYNGTSVKTTVDLYIS 407
           +NI S  I ++ +LYGY + + S   FSS         +D++IS
Sbjct: 343 LNINSQVIAFLLYLYGYFLPAPSTPGFSSNKPPLTMLQLDIHIS 386


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 287 NIYMSVGLPTPVAGALMM 234
           +IY SV +PTP+ G+L++
Sbjct: 293 DIYASVSIPTPLGGSLLL 310


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 5   VTRNPFTYST*CSKCYHSL*HIEFV*IALQILLVLCKLIDFNV 133
           +   PF  +   S  YH + +  F  +A  ++L  C +I  NV
Sbjct: 373 IVSGPFQIALALSNLYHLMGYSAFTGVAASVILFPCNIIVANV 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,708
Number of Sequences: 5004
Number of extensions: 55752
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)