Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1047
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49150.1 68418.m06083 hypothetical protein                          30   1.8  
At3g07570.1 68416.m00907 membrane protein, putative similar to m...    28   5.6  
At4g16050.1 68417.m02435 expressed protein                             27   9.7  

>At5g49150.1 68418.m06083 hypothetical protein
          Length = 896

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 282 NISLSIKYMYFL-YGYKISSKSDAWFSSYNGTSVKTTVDLYISIDFYFF-SKKIITYVAR 455
           NIS S K M F  +   + S++ ++    N T ++  V  YISIDF    S K +  V +
Sbjct: 36  NISFSGKKMEFQEFSLSLISENGSFAGVLNSTHIRWIVSGYISIDFVLVTSGKFLLLVEK 95

Query: 456 E 458
           E
Sbjct: 96  E 96


>At3g07570.1 68416.m00907 membrane protein, putative similar to
           membrane protein SDR2 (GI:1747306) [Mus musculus]
          Length = 369

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +3

Query: 195 KMNIIISHPNKDSHH*RPRNWCRESNTHINISLSIKYMYFLYGYKISSKSDAWFSSYNGT 374
           +M  +++ P+K S + +  NW   +   + I L+I  ++  YG  ++    +W   Y G 
Sbjct: 293 QMLALLARPDKQSKYRKYWNWYHHNIGRLLIILAISNIF--YGIHLAKAGTSWNGGY-GF 349

Query: 375 SVKTTVDLYISIDFYFFSKK 434
           +V       I ++   F KK
Sbjct: 350 AVAVLALTAIGLEVRKFLKK 369


>At4g16050.1 68417.m02435 expressed protein
          Length = 666

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +3

Query: 249 RNWCRESNTHI----NISLSIKYMYFLYGYKISSKSDAWFSSYNGTSVKTTVD 395
           +NWC E+NT +      +++++ +  L G+ IS  S   F+S   + +K  V+
Sbjct: 121 QNWCPETNTFVFPWGEATITLEDVNVLLGFSISGSS--VFASLQSSEMKEAVE 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,421,457
Number of Sequences: 28952
Number of extensions: 268860
Number of successful extensions: 479
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)