Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1046
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17) 46 3e-05
SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05) 29 2.4
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 28 5.5
SB_38350| Best HMM Match : OCIA (HMM E-Value=6.7) 28 7.2
SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 28 7.2
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7) 27 9.6
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 27 9.6
>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
Length = 339
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +1
Query: 205 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLAL 369
Y PP +KT EEI D +DE+L KYK+ LLG P P+ V+V+K+A+
Sbjct: 22 YVPPAQKTWEEIQNLDADDEALVKYKQTLLGVTPEEL----PKGPKNVVVEKVAI 72
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 427 KKQVFVIKEGVQYRIRIDF-IVQREIVHGLKYVQKTYRLG 543
K IKEG Y+I+I F + +I+ GL+ YR G
Sbjct: 139 KDSPITIKEGTYYKIKIIFKVYNDQIISGLRLHNLFYRKG 178
>SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 36 RCKFYNYLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
+C+ L++KC +FRLL C+ F YK E ++R
Sbjct: 149 KCECILRLLYKCECIFRLLYKCECIFRLLYKCECIFR 185
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 36 RCKFYNYLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
+C+ L++KC +FRLL C+ F YK E ++R
Sbjct: 159 KCECIFRLLYKCECIFRLLYKCECIFRLLYKCECIFR 195
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 36 RCKFYNYLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
+C+ L++KC +FRLL C+ F YK E ++R
Sbjct: 169 KCECIFRLLYKCECIFRLLYKCECIFRLLYKCECIFR 205
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 36 RCKFYNYLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
+C+ L++KC +FRLL C+ F YK E ++R
Sbjct: 179 KCECIFRLLYKCECIFRLLYKCECIFRLLYKCECIFR 215
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 36 RCKFYNYLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
+C+ L++KC +FRLL C+ F YK E ++R
Sbjct: 189 KCECIFRLLYKCECIFRLLYKCECIFRLLYKCECIFR 225
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 36 RCKFYNYLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
+C+ L++KC +FRLL C+ F YK E ++R
Sbjct: 199 KCECIFRLLYKCECIFRLLYKCECIFRLLYKCECIFR 235
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 36 RCKFYNYLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
+C+ L++KC +FRLL C+ YK E ++R
Sbjct: 129 KCECIFRLLYKCECIFRLLYKCECILRLLYKCECIFR 165
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 36 RCKFYNYLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
+C+ L++KC + RLL C+ F YK E ++R
Sbjct: 139 KCECIFRLLYKCECILRLLYKCECIFRLLYKCECIFR 175
>SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05)
Length = 538
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 501 DLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSEIQLDIIAPNHTQC*LL 355
D L+D Y +++T LY EYL+ EV Q D+ + + C +L
Sbjct: 390 DYVLSDPRTQYELIHTWLYQEYLMQEVKVEEVGDQPDLYSYDQVLCTIL 438
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 229 IEEILAADQEDESLRKYKEALLGQAQAGA-VIVEPDDPRKVIVKKLALCVV 378
I ++ +D ED++ YKE G+ +GA EPDD + ++++ +
Sbjct: 781 IRQLAMSDSEDDASSSYKEKPAGRRSSGASQNSEPDDDILTLSQRISQAAI 831
>SB_38350| Best HMM Match : OCIA (HMM E-Value=6.7)
Length = 537
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -3
Query: 399 QLDIIA-PNHTQC*LLHYHFARIIRFNN--DSTCLGLSKQCFLVLPKGFI 259
+L I+A PN LL Y+ + + S+C + CFLVLP+ FI
Sbjct: 353 RLKILAKPNSYLTGLLSYYSLLLDSYPTCQTSSCFIMDSSCFLVLPESFI 402
>SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 280 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 384
+E LL + G IVEP DP +I + +A C++ R
Sbjct: 8 REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSR 41
>SB_9112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 280 KEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 384
+E LL + G IVEP DP +I + +A C++ R
Sbjct: 32 REVLL-EGVEGVRIVEPCDPSGLIAENVAHCILSR 65
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 148 PEVAHTPXXXXXXXXIKSSYKPP----PEKTIEEILAADQEDESLRKY 279
P H P +Y+PP P T + AADQ+DE+L++Y
Sbjct: 285 PPAVHAPYHPPPAYS-NPTYQPPASTYPPPTSTGMAAADQKDETLKRY 331
>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
Length = 534
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 548 ERPSL*VFCTYFRPCTISR*TIKSILIRYCTPSFIT 441
ERP+L F PCT+ IK RY T S +T
Sbjct: 393 ERPALPGQTAVFLPCTLFNDYIKGYCFRYTTISSLT 428
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 220 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRK 345
E + EE AAD+E E K EA +A+A +VE ++P K
Sbjct: 1059 ETSFEEAEAADEETEEPVKEAEASFEEAEAP--VVETEEPVK 1098
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 211 PPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRK 345
PP T+ E AD DES K+A++ + I EP P+K
Sbjct: 48 PPQSPTVSEASTADTADESGSTEKDAVVEE----EAIKEPSGPQK 88
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,642
Number of Sequences: 59808
Number of extensions: 360283
Number of successful extensions: 785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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