Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1045
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.49 
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    28   1.1  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   1.5  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.5  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   3.5  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   4.6  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.1  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   8.0  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.0  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.0  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 391 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 561
           AK S   D   K +  K  + A+ PE SK  V+       KEE  S +++E S+  +
Sbjct: 41  AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 436 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNM 579
           I VE    QPEDSK T+V      +S +EK +    + S D  A + ++
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDV 573


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 446 KNQLLSLKIQKLKYKLPSLKFQKKKNL 526
           KN LLS KI +  Y+  S+++QK KN+
Sbjct: 40  KNGLLSPKITQRFYQNSSIQYQKDKNI 66


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 330 VFWGYIVLFGLWYSGYLVVTNW 265
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 412 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 558
           D   +   I  E PA    + K   +  + + S  E+PS T  EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 418 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 555
           ++K  + KVEE  ++  D K +   ++    KEEK   TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 415 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 552
           AEA + D   + P       K  V  +VAE  ++E  +  ++E  A
Sbjct: 76  AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 394 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKP 525
           K S+ P+ +  +    KVEEP+ + ++   + + TV +  +E+ P
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTP 490


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 412 DAEAKSADIKVE-EPAAQPEDSKTEVQATVAEISKEEKP 525
           D +   +DIK + E +   +DSK +V  TV EIS   +P
Sbjct: 264 DLKDMQSDIKPDVEKSDAMDDSKMKVDYTVNEISNAVQP 302


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 397  SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS 549
            SS   DA AKS   +  EPA +P +   + ++T     + EK + TD   +
Sbjct: 898  SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSST 947


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 400 SEIPDAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPSATDAEGSA 552
           S IP  E    +I VEE    +P     EV+ T A   +E+ P   D+E +A
Sbjct: 142 SPIPSPETIHKNIDVEEKETIEPTTPVKEVETT-AHAEEEKGPLTPDSEYAA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,739
Number of Sequences: 5004
Number of extensions: 27592
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)