Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1045
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 37   0.014
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)                 31   0.51 
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.68 
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)                       30   1.2  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   30   1.2  
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)                    30   1.2  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        30   1.6  
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)                 30   1.6  
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)                  29   2.1  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              29   3.6  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)           27   8.4  

>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 403 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 543
           E P  EA+S D KVE P  + E  + EV+ATV E+    + +A   E
Sbjct: 22  ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPMEEAAASVE 68


>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
          Length = 410

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 412 DAEAKSADIKVEEPAAQPEDSKT----EVQATVAEISKEEKPSATDAEGSADSAAIIP 573
           DAE  S+ I V  P+AQ E  +T     V + +A ++ E      D+    D  AIIP
Sbjct: 285 DAEPASSSISVSVPSAQAEQGRTTEGRPVSSDIATVAMEVPEVQGDSLADVDIDAIIP 342


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 397 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATD-AEGSAD 555
           ++E+P  +A ++  + E PAA+PE +  E +A V + + EE  +  + AE   D
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEEPEALNEKAEDPKD 640



 Score = 30.7 bits (66), Expect = 0.90
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 415  AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP-SATDAEGSADSA 561
            A  + A++ +EE   Q ED++  V+   A + K E P   T+A    D A
Sbjct: 1172 ASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDEA 1221


>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 926

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 394 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 573
           K++ +P+A   +A  +  E  AQPE  K        E + + + + T A+  A  A   P
Sbjct: 393 KATALPEAPKATAQPEAPEATAQPEAPKATALPEAPEATAQPEATETTAQPKAQKATAQP 452


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +1

Query: 442  VEEPAAQPEDSKTEVQATV--AEISKEEKPSATDAEGSADS 558
            +E PA   ED KT+ +AT   AE+ +E KP+A D + SA S
Sbjct: 1129 LESPA---EDVKTDFEATSLEAEVFEEYKPTAKDVKESASS 1166


>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
          Length = 636

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 394 KSSEIPDAEAKSADIKVEEPAA-QPEDSKT-EV---QATVAEISKEEKPSATDAEGSADS 558
           K +   D  + S+D  +E   A +P  S T EV     T A +  EE+PS TD EGS  +
Sbjct: 359 KQTTAHDPTSSSSDQLIEHSVAGRPSPSVTPEVAREDCTQASLQLEERPSNTDGEGSGQT 418


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +1

Query: 409  PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAA 564
            PD +A + + + + P +Q EDS +    T   +S EE+P    ++ S  SAA
Sbjct: 915  PDPQAPATNNQTDNPPSQYEDSSS--SETNGVLSDEEQPPLPLSDSSIQSAA 964


>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
          Length = 191

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 400 SEIPDAE-AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 552
           S++P  + AK+A+ + E+ A  PE+   E     A    E K ++ D EG+A
Sbjct: 50  SKMPSKKGAKAAEAQPEKKAEAPEEKPAEDSKDQAVEESETKDASKDGEGNA 101


>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
          Length = 595

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 524 GFSSFEISATVACTSVFESSG*AAGSSTLISADFASASGISDDF 393
           G SS ++    +C+SVFE +  A  SS L  AD + +  IS ++
Sbjct: 498 GGSSSQMDVMGSCSSVFEQAMLAGESSNLSDADKSESKDISKNY 541


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 394  KSSEIPDAEAKSADIKVEEPAA-QPEDSK-TEVQATVAEISKEEKPSA-TDAEGSADSAA 564
            K  +  D E K  + + E+    + E +K TEVQ  V E +KEE PS   DAE     A 
Sbjct: 1025 KKRKDSDKERKVKEKEEEQKVKIEKEPNKVTEVQLMVEETNKEESPSTDRDAESELPKAG 1084

Query: 565  II 570
             +
Sbjct: 1085 SV 1086


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 421  AKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 576
            AKS D+K  E A++ ++  T+      ++ K+ KP++   +  A  +A + N
Sbjct: 1912 AKSKDVKNAEEASRNDEDDTKTGNVSEDLIKQAKPTSKTRKKRASLSAKVTN 1963


>SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)
          Length = 362

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 403 EIPDAEAKSADIKVEEPAAQPEDS-KTEVQATVAEISKEEKPSATDAEG 546
           E+ DA     D +VEEPA+  ++S KT++   + +    +K     A G
Sbjct: 73  EVDDAALDDEDEQVEEPASDTDESGKTDLNDPMIDDQDADKEIELQARG 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,974,243
Number of Sequences: 59808
Number of extensions: 203049
Number of successful extensions: 1038
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)