Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1045
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    31   0.78 
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   1.8  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   4.2  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   4.2  
U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   5.5  
U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 394 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPSATD 537
           KS E P  E K ++  V     +EPAA  E+ K   +  V E  KEE P++++
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPASSE 178


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 391 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 552
           A+  E  +A A+ A  + EEP A  E++  E +       +EEKP A   E  A
Sbjct: 21  AEEVEEEEAAAEDAAAEEEEPEAAEEEAPVEEKPKPRPPVQEEKPPAEMTEAEA 74


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 25/101 (24%), Positives = 38/101 (37%)
 Frame = +1

Query: 271 SNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEE 450
           +++  PA  EA   D A  ++  A                A SS +P+     A    E 
Sbjct: 504 ASEPAPAPIEAPATDAATLETAPAPAAEPAPAAEAAAGYDAPSS-VPEETPAPAPAADET 562

Query: 451 PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 573
           PA  P   +T   A  AE +    P+A +   +A +A   P
Sbjct: 563 PAPAPAAEETPAPAPAAEETPAPAPAAEETPATAPAAEETP 603


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 124 VSLAMPVAEEKDVVPAQPIL 183
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 124 VSLAMPVAEEKDVVPAQPIL 183
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 124 VSLAMPVAEEKDVVPAQPIL 183
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 124 VSLAMPVAEEKDVVPAQPIL 183
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical
           protein C53C9.2 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 403 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 543
           E  + E +  + K+EEPAA+ E+ + E +    E   EE+    + E
Sbjct: 347 EPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEELEEEEEEEEEE 393


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 410 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 511
           P L  N+LI  WK +    K ++ KY +  LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232


>U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical
           protein T20F5.5 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 424 KSADIKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNM 579
           KSA  K+  P+ + ED++ T+  A+  E S + KP  T  E SAD    + ++
Sbjct: 66  KSASKKLRVPSKESEDTQPTKSDASQTEKSTK-KPPVTLVESSADVTTAVESI 117


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
 Frame = +1

Query: 406 IPDAEAKSADIKVEEPAAQP---------EDSKTEVQATV-AEISKEEKPSATDAE 543
           +PD E    D +VEEP A+          ED ++E++    A++S EE+  A DAE
Sbjct: 1   MPDPEDPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNADLSSEEELVAPDAE 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,644,913
Number of Sequences: 27780
Number of extensions: 151820
Number of successful extensions: 562
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)