Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1045
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    33   0.10 
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    32   0.32 
At3g49990.1 68416.m05466 expressed protein                             31   0.42 
At5g63550.1 68418.m07976 expressed protein                             30   0.97 
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    30   0.97 
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate...    29   1.7  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    27   2.1  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   3.0  
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi...    28   3.9  
At2g02170.1 68415.m00153 remorin family protein contains Pfam do...    28   5.2  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    28   5.2  
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ...    27   6.8  
At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide famil...    27   6.8  
At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide famil...    27   6.8  

>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 409 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 561
           P A AK+  +K ++ ++  +DS +E +      +K  KP+A D+  S D +
Sbjct: 141 PAAAAKNGSVKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDS 191



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +1

Query: 301 AKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEEPAAQPEDSKT 480
           +  DD + EDS+                  +  S   D++ +S D   E+PA +  D+K 
Sbjct: 185 SSSDDDSDEDSEDEKPATKKAAPAAAKAASSSDSSDEDSDEESED---EKPAQKKADTKA 241

Query: 481 EVQATVAEISKEEKPSATDAE 543
             +++  E S+ E+  + D E
Sbjct: 242 SKKSSSDESSESEEDESEDEE 262


>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -3

Query: 215 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 111
           +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>At3g49990.1 68416.m05466 expressed protein
          Length = 502

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 406 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 543
           +P   A+  D+K E P A+P   KT  Q +  E  K+E+ +A  AE
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE--KKERKNAVKAE 465


>At5g63550.1 68418.m07976 expressed protein
          Length = 530

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +1

Query: 403 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAA 564
           E  D + +  +++VE+P+ +   SK  V+ +     K+++PSA  +  S + ++
Sbjct: 320 EKTDTDDEKDEVEVEKPSKKKSSSKKTVEESSGSKGKDKQPSAKGSARSGEKSS 373


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 409 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA 531
           P  E K  + K EE   + E+ KTE ++  AE  +EEK +A
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAA 163


>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
           contains weak similarity to vacuolar calcium binding
           protein [Raphanus sativus] gi|9049359|dbj|BAA99394
          Length = 152

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +1

Query: 280 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 456
           E P + E KKD+ AP ++ +                  K  E+ + + + A + V EE  
Sbjct: 73  ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129

Query: 457 AQPEDSKTEVQATV-AEISKEEK 522
            + E+ K  V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 27.1 bits (57), Expect(2) = 2.1
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 403 EIPDAEAKSADIKVEEPAAQPED-SKTEVQATVAEISKEEKPSATDAE 543
           E+P  E+K  ++ V+  +A+PE  S+++ + T  E + E KP  T AE
Sbjct: 109 EVPPEESKR-EVVVQPESAKPETKSESKPETTKPETTSETKPE-TKAE 154



 Score = 20.6 bits (41), Expect(2) = 2.1
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 292 IPEAKKDDIAPEDS 333
           +PE  K ++ PE+S
Sbjct: 102 VPEESKQEVPPEES 115


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 277 DEVPAIPEAKKDDIAPE 327
           D+  +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213


>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 793

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 413 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNL 526
           M K+N+ + K+K ++L LK  K  YK  + K Q +  L
Sbjct: 740 MEKKNMFVDKYKYRMLFLKYHKTAYKGKAPKVQSESQL 777


>At2g02170.1 68415.m00153 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 486

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 412 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 561
           +AE K  ++KVE    + +D   +  AT+ E   EEK +A +A+    +A
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKKDHQAA 459


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +1

Query: 391 AKSSEIPDAEAKSADIKVEEPAAQPED-------SKTEVQATVAEISKEEKPSATDAEGS 549
           A   E P AE  ++   VEE AAQPE         + E +   A   K++K    + E  
Sbjct: 308 AALGETPAAERPASSTPVEEKAAQPEPVAPVENAGEKEGEEETAAAKKKKKKKEKEKEKK 367

Query: 550 ADSAA 564
           A +AA
Sbjct: 368 AAAAA 372


>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 586

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 379 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 293
           FL F   E  PV  ++ L  L RP WPL+
Sbjct: 25  FLSFPRPENTPVQLFQLLHTLERPGWPLL 53


>At4g20260.2 68417.m02960 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 403 EIPDAEAKSADIKVEEPAAQPEDSKTE-VQATVAEISKEEKPSAT 534
           E+   E    ++K EEPA   E +KTE       EI +E K   T
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTEGTSGEKEEIVEETKKGET 177


>At4g20260.1 68417.m02959 DREPP plasma membrane polypeptide family
           protein contains Pfam profile: PF05558 DREPP plasma
           membrane polypeptide
          Length = 225

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 403 EIPDAEAKSADIKVEEPAAQPEDSKTE-VQATVAEISKEEKPSAT 534
           E+   E    ++K EEPA   E +KTE       EI +E K   T
Sbjct: 133 EVKTKEIPVEEVKAEEPAKTEEPAKTEGTSGEKEEIVEETKKGET 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,149,750
Number of Sequences: 28952
Number of extensions: 141344
Number of successful extensions: 462
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)