Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1043
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 31 0.25
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 30 0.43
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 29 0.76
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 28 1.3
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 28 1.3
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 4.0
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 26 5.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 7.1
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 26 7.1
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 30.7 bits (66), Expect = 0.25
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 173 ALLAAVLPSESHGERPENVLFAEMEIDKKIKVLGLQW-NPKSDSFNFKVKVSSLKCTK 343
ALL L E H +P A+ +++KK K QW N K++S K K ++ K K
Sbjct: 381 ALLQQELALEGHRAKPGENPLAKKKVNKKRKERAAQWRNKKAESVGKKQKTAAGKKDK 438
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 29.9 bits (64), Expect = 0.43
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = -3
Query: 733 FEARNSETHTQRCDASFGYNQVSLNEIF-LIFVTN-IYTCSETLLGSVSKTVNLYR 572
F+ ++T T+ C +S G LN+ + ++F+T+ IY+C +T SVS T + Y+
Sbjct: 361 FDELVNDTSTKNC-SSIGSLIRQLNKSWEVVFLTSVIYSCCKTPAASVSNTFSSYK 415
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 0.76
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 545 YIFNNNNSEPIQIHGFADASEKGF 616
++ +N N P+Q H F D EKG+
Sbjct: 7 FVHSNANFPPLQTHNFEDIPEKGY 30
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 275 LQWNPKSDSFNFKVKVSSLKCTKRVILSE-IAKIYDPLGLLSPV 403
+ WNP+ F+ K K SS + +S I + LGLL+P+
Sbjct: 352 IDWNPEGFMFHSKTKKSSFNTSLGEFISNGIYEARKALGLLTPI 395
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 543 VIYLTIIIPNRYKFTVLLTLPRRVSEHVYIFVTKIKKISFKL 668
++Y+++ I N Y T L++L V H++ K K+
Sbjct: 9 ILYISLSIDNNYLVTTLISLKENVFLHIFTLTFLFKAFLLKM 50
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +2
Query: 413 AKHLIQLLWIAKVDWDETPPVDIVNSWSSFVDE 511
+ ++ + + +++WDE +++VNS SF+ E
Sbjct: 410 SSYMFAITKMDEIEWDENKFINLVNSIQSFLKE 442
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 147 CANGTATRQRYSLRCCHQSLMVSGRRTFSSLKWRSTKRLRFWAYSGTLNLIHSILKSKFH 326
C+ G + L C + + G + + WR+ R+ AYSG + SI K H
Sbjct: 256 CSMGLLHSRIRRLIYCKKQPLTGGIESLYGIHWRAELNHRYLAYSGWNKPVPSI-KENIH 314
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 7.1
Identities = 22/88 (25%), Positives = 44/88 (50%)
Frame = +2
Query: 245 EIDKKIKVLGLQWNPKSDSFNFKVKVSSLKCTKRVILSEIAKIYDPLGLLSPVTLFAKHL 424
++ + KV+ L WNP +DSF+ ++C + + Y+ + P+ LF +
Sbjct: 1058 DVQEFYKVI-LGWNPLADSFS--ASNVEMQCVQAKFTYNDSNAYEK--VFKPM-LFHECW 1111
Query: 425 IQLLWIAKVDWDETPPVDIVNSWSSFVD 508
Q+ + V+ + PP+D++ + S VD
Sbjct: 1112 AQVK--SAVEEKQYPPIDLILNTRSTVD 1137
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 643 FVTNIYTCSETLLGSVSKTVNLYRFGI 563
F+ + CS+T++ +++K V+ RFG+
Sbjct: 111 FIQSSENCSKTIVDTIAKFVSPLRFGL 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,524
Number of Sequences: 5004
Number of extensions: 66303
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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