Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1043
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581...    30   1.8  
07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,309...    29   3.2  
07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,305...    29   3.2  
07_01_0396 + 3016900-3017175,3017926-3018039,3018138-3018350,301...    29   3.2  
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779...    29   3.2  
01_06_1673 + 39059483-39059611,39059851-39060032,39060247-390604...    29   5.6  
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914...    28   7.4  
05_03_0371 + 13175939-13176688,13177367-13178629                       28   7.4  
07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134...    28   9.7  

>05_06_0046 -
           25157093-25157431,25157810-25157928,25158024-25158189,
           25158289-25158415,25158490-25158590,25158719-25158905,
           25159000-25159100,25159220-25160194,25160325-25160423,
           25160500-25160972,25161307-25161420,25161830-25161900,
           25162015-25162086,25162334-25162377
          Length = 995

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 254 CRSPFQRRERSPAAHHETLMAAPQRVTLASCCAICAIQTQP 132
           C+ PF+RRE  PA H + L++  + +  A+   + + Q  P
Sbjct: 55  CKVPFRRREMRPAPHMDNLVSIFKSMEAAAGTNVVSTQEAP 95


>07_01_0404 +
           3093851-3094051,3094622-3094948,3096685-3096798,
           3096897-3097109,3097975-3098151,3098270-3100091,
           3100107-3100927,3101070-3101390
          Length = 1331

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 461 ETPPVDIVNSWSSFVDE-LPLISQISFPRYIFNNNNSEPIQIHGFADAS 604
           + P   + +S +S +D+   L S  S P Y  NN   +P  IHG+  AS
Sbjct: 841 QLPSTQLQSSSNSLLDQGARLNSNFSTPSYADNNQFYQPATIHGYQLAS 889


>07_01_0400 +
           3048607-3048807,3049378-3049704,3051441-3051554,
           3051653-3051865,3052731-3052907,3053026-3054847,
           3054863-3055683,3055826-3056146
          Length = 1331

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 461 ETPPVDIVNSWSSFVDE-LPLISQISFPRYIFNNNNSEPIQIHGFADAS 604
           + P   + +S +S +D+   L S  S P Y  NN   +P  IHG+  AS
Sbjct: 841 QLPSTQLQSSSNSLLDQGARLNSNFSTPSYADNNQFYQPATIHGYQLAS 889


>07_01_0396 +
           3016900-3017175,3017926-3018039,3018138-3018350,
           3019216-3019392,3019511-3021332,3021348-3022168,
           3022311-3022631
          Length = 1247

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 461 ETPPVDIVNSWSSFVDE-LPLISQISFPRYIFNNNNSEPIQIHGFADAS 604
           + P   + +S +S +D+   L S  S P Y  NN   +P  IHG+  AS
Sbjct: 757 QLPSTQLQSSSNSLLDQGARLNSNFSTPSYADNNQFYQPATIHGYQLAS 805


>07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,
            77916-78116,78463-78541,78637-78678,78788-78847,
            79087-80484,80777-80902,81037-81300
          Length = 1501

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
 Frame = -1

Query: 612  PFSEASAKP*ICIGSELLLLNI*RGNEICEMSGSSSTKEDHEFTMSTGGVSSQSTLAIHK 433
            P  + S+ P    G +  L++I  G   C M+GSS T+ +    +    +S      +H+
Sbjct: 1202 PRLDESSVPNFPGGQDFSLISIDEGFMSCTMTGSSLTETNKAILVEEDFISDPIE-GMHR 1260

Query: 432  S*IKCLAN-NVTGDNRPRGSYIFAISDRMTRFVHLSDETLTLKL 304
              ++       TG +RPR      I DRM     L   T  ++L
Sbjct: 1261 ETVEIKGRCRKTGLHRPRPRDRQLIQDRMMELRQLVPNTSKVQL 1304


>01_06_1673 +
           39059483-39059611,39059851-39060032,39060247-39060445,
           39060532-39060693,39060920-39061222,39061343-39061603
          Length = 411

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
 Frame = -1

Query: 576 IGSELLLLNI*RGN-EICEMSGSSSTKEDHEFTMSTGGVSSQSTLAIHKS*IKCLANNVT 400
           IG    LL I   N  I  +S   STK+  +  +  G    ++ L    S  +C  NN+ 
Sbjct: 315 IGCSHQLLRIQDHNIPIGAISNDLSTKDHLQLLVKIG----ENLLKKPLSKEECEKNNIE 370

Query: 399 GDNRPRGSYIFAISDRMTRFVHLSDETLTLKLNESDL 289
            +    G ++   +D +TRF  L  +   L+L+   L
Sbjct: 371 PEPNLHGDHVTTYADMLTRFAKLLSDERKLRLHNMKL 407


>05_07_0004 + 26990250-26990516,26990877-26990931,26991286-26991461,
            26991702-26991923,26992001-26992239,26992437-26992962,
            26993042-26993315,26993391-26994009,26994082-26994121,
            26994263-26994310,26994548-26994814,26994892-26995155,
            26995260-26995904
          Length = 1213

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 378  SYIFAISDRMTRFVHLSDETLTLKLNESDLGF 283
            S IFAI DR ++    S+E LTL+L + D+ F
Sbjct: 941  SSIFAILDRKSQIDSSSNEGLTLELVKGDIEF 972


>05_03_0371 + 13175939-13176688,13177367-13178629
          Length = 670

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 458 DETPPVDIVNSWSSFVDELPLISQISFPRYIFNNNNSEPIQIHGFADASEKGF 616
           D+   VD V SWS      PL  + S    +FNN  +   +I   + + +K F
Sbjct: 521 DDASSVDSVKSWSHGETPTPLRQKYSRMSSLFNNKRTMAARIGSPSPSMKKSF 573


>07_03_0749 +
           21212463-21212911,21212976-21213305,21213336-21213436,
           21213758-21213883,21213962-21214083,21214177-21214450,
           21214767-21215004,21215101-21215248,21215400-21215732
          Length = 706

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/35 (28%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
 Frame = -3

Query: 604 GSVSKTVNLYRFGIIIVKYITRK*DL-*DEWELIN 503
           G+VS  ++++ FG+++++ +TR+ +   D+ +L+N
Sbjct: 558 GNVSTKIDIFSFGVLVLEIVTRRRNCNSDDHDLVN 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,199,875
Number of Sequences: 37544
Number of extensions: 418047
Number of successful extensions: 1360
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)