Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1043
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 685 FGYNQVSLNEIFLIFVTNIYTCSETLLGSVSKTVNLYRFGII 560
           FG+    +  +  I  T ++   E L G    +V++Y FGI+
Sbjct: 741 FGFCITEVMMLGSIVGTPVHMAPELLSGHYDSSVDVYAFGIL 782


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 685 FGYNQVSLNEIFLIFVTNIYTCSETLLGSVSKTVNLYRFGII 560
           FG+    +  +  I  T ++   E L G    +V++Y FGI+
Sbjct: 779 FGFCITEVMMLGSIVGTPVHMAPELLSGHYDSSVDVYAFGIL 820


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 18/77 (23%), Positives = 30/77 (38%)
 Frame = +2

Query: 347 VILSEIAKIYDPLGLLSPVTLFAKHLIQLLWIAKVDWDETPPVDIVNSWSSFVDELPLIS 526
           V++S IA    P  + + VTL    L+ L           PPV  V +   ++    +  
Sbjct: 228 VVMSWIAFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFV 287

Query: 527 QISFPRYIFNNNNSEPI 577
            +S   +   NN   P+
Sbjct: 288 FLSLMEFAVVNNYMGPV 304


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 705 VCVSLFLASN*RRQSSYL 758
           VCV++FL    RR  +YL
Sbjct: 62  VCVAVFLVRKLRRPCNYL 79


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 329 LKCTKRVILSEIAKIYDPLGLLSPVTLFAKHLIQLLWIAKVDW 457
           + C KRV  S I  +   L +   +  F    +++ W   V W
Sbjct: 62  ITCRKRVSKSRIHIMLMHLAIADLLVTFLMMPLEIGWAITVSW 104


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 617 RNPSRKRQQNREFVSVRNYYC*IYNAEMRFVR*VGAHQR 501
           R  S  R +NRE+      Y  ++N + +F+    +H+R
Sbjct: 233 RERSCSRDRNREYRKKDRQYEKLHNEKEKFLEERTSHKR 271


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +1

Query: 598 RFREGFRSMCIYSLQRS--RRFHSNSPDYSQNSRRTVE 705
           R++E      +  LQ    RR H NSP +  +  R  E
Sbjct: 99  RYQEHPNGKILRELQTDYDRRLHDNSPSFLSDHSRDQE 136


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 458 DETPPVDIVNSWSSFVDE 511
           D++   D++ SW + +DE
Sbjct: 260 DQSETYDVLRSWRNLMDE 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,672
Number of Sequences: 438
Number of extensions: 4305
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)