Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1043
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49490.1 68416.m05409 expressed protein                             34   0.12 
At3g21630.1 68416.m02728 protein kinase family protein contains ...    31   0.87 
At4g05300.1 68417.m00803 hypothetical protein                          30   2.0  
At5g34838.1 68418.m04072 hypothetical protein contains Pfam doma...    29   4.6  
At4g13020.2 68417.m02032 serine/threonine protein kinase (MHK) i...    28   6.1  
At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger) fa...    28   6.1  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    28   6.1  
At3g01370.1 68416.m00059 expressed protein contains Pfam domain,...    28   8.1  
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain...    28   8.1  
At1g05370.1 68414.m00544 expressed protein                             28   8.1  

>At3g49490.1 68416.m05409 expressed protein
          Length = 953

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 604 REGFRSMCIY--SLQRSRRFHSNSPDYSQNSRRTVECASHYSSPRTNGGSPL 753
           +E F  M +Y  S QRS    SN+P Y +NSR     +S Y+    +G S L
Sbjct: 50  KEVFDPMMLYHDSYQRSPANWSNNPSYRENSRSQTPSSSFYADNTQHGNSGL 101


>At3g21630.1 68416.m02728 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 617

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 628 YTCSETLLGSVSKTVNLYRFGIIIVKYITRK 536
           Y   ET+ G VS  V++Y FG+++ + I+ K
Sbjct: 482 YMAPETVYGEVSAKVDVYAFGVVLYELISAK 512


>At4g05300.1 68417.m00803 hypothetical protein
          Length = 387

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 210 VSGRRTFSSLKW-RSTKRLRFWAYSGTLNLIHSILKSKFHRLSVQSVSFCQK*QKYTTP 383
           +S   T ++ +W RS + LR      TLNL++  L +  H +S+  + F  +  K  TP
Sbjct: 162 ISQLHTENARRWERSWRCLRVRTLYSTLNLVYRTLGNCVHNISINLIVFDVEGTKTNTP 220


>At5g34838.1 68418.m04072 hypothetical protein contains Pfam domain,
           PF04827: Protein of unknown function (DUF635)
          Length = 311

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 213 SGRRTFSSLKWRSTKRLRFWAYSGTLNL 296
           +GR  FS+L+ +ST  +R  AY GT+NL
Sbjct: 44  TGRLGFSALQ-KSTAAIRMLAYEGTINL 70


>At4g13020.2 68417.m02032 serine/threonine protein kinase (MHK)
           identical to serine/threonine-protein kinase MHK
           [Arabidopsis thaliana] SWISS-PROT:P43294
          Length = 443

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 655 IFLIFVTNIYTCSETL----LGSVSKTVNLYRFGIIIVKYITRK 536
           +F++FV   Y   E L     GSV K VNL  + ++ VK + RK
Sbjct: 3   VFVVFVMCRYKILEELGDGTCGSVYKAVNLETYEVVAVKKMKRK 46


>At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 155

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +2

Query: 353 LSEIAKIYDPLGLLSPVTLFAKHLIQLLWIAKVDWDETPPVDIVNSWSSFVDELPLISQI 532
           LS+++    PL LLS + +F  HL   L       +   PVD V+  S   + + L  Q+
Sbjct: 7   LSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTSKSNPNLPVDDVSIASGLANIIVLADQL 66

Query: 533 SFPR 544
           S  R
Sbjct: 67  SLNR 70


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P46100
            Transcriptional regulator ATRX {Homo sapiens}; contains
            PFam profiles PF00271: Helicase conserved C-terminal
            domain, PF00176: SNF2 family N-terminal domain;
            non-consensus GC donor splice site at exon boundary 28614
          Length = 1457

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -2

Query: 272  PEP*SFCRSPFQRRERSPAAHHETLMAAPQRVTLASCCAIC--AIQTQP--PHKYLSALV 105
            P+P  F RS F  R  +  AH  TL++   +V  ++ C  C   I+ +   P   LSA++
Sbjct: 1396 PQPKGFNRSRFVNRNCTRIAHQLTLISQGLKVGSSTVCGECGRVIRWEDVIPASKLSAVI 1455

Query: 104  V 102
            V
Sbjct: 1456 V 1456


>At3g01370.1 68416.m00059 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 1011

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +2

Query: 626 VYIRYKDQEDFIQTHLIIAKTRVAPLSVRLTIPRLELTAAVLLSKLIEKVM 778
           + +  KDQ+D IQTH + ++ R +P ++ L    ++L+ A+      EKV+
Sbjct: 511 IELEAKDQKDHIQTHQMKSRQRNSPEAI-LEKTSMKLSMALEKKANAEKVL 560


>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein contains Pfam profile PF00564:
           PB1 domain
          Length = 174

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -1

Query: 330 SDETLTLKLNESDLGFHCKPRTLIFLSISISAKRTFSGRSP*DSDGSTAASNAGELLCHL 151
           SDE L   + E DL    + +  +FLS  + + RT +  SP  S  S+++S +       
Sbjct: 80  SDEDLKNLMEEYDLAITAQVKIHVFLS-PLKSTRTTANSSPPPSTTSSSSSKS------- 131

Query: 150 RNSNPAAPQIP 118
           R+ +P +P  P
Sbjct: 132 RSRSPPSPSTP 142


>At1g05370.1 68414.m00544 expressed protein
          Length = 439

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 637 LQRSRRFHSNSPDYSQNSRRTV 702
           LQ S  FH ++ DY+QNSRR +
Sbjct: 198 LQISISFHEHTCDYTQNSRRGI 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,242,496
Number of Sequences: 28952
Number of extensions: 341672
Number of successful extensions: 1122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)