Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1042
         (408 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    27   0.094
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    27   0.094
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    27   0.094
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    27   0.094
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    27   0.094
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    27   0.094
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           27   0.094
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    27   0.094
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    27   0.094
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    25   0.29 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.29 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   0.87 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   0.87 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   2.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   2.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   4.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   8.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    20   8.1  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   8.1  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    20   8.1  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 193 TIPQSTPHGTYGTKYRGNRSPSADPEAPPG 104
           T P STP  +  TK  G  SP +   +PPG
Sbjct: 126 TPPLSTPSNSNATKSSGLTSPLSVSTSPPG 155


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 193 TIPQSTPHGTYGTKYRGNRSPSADPEAPPG 104
           T P STP  +  TK  G  SP +   +PPG
Sbjct: 126 TPPLSTPSNSNATKSSGLTSPLSVSTSPPG 155


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 193 TIPQSTPHGTYGTKYRGNRSPSADPEAPPG 104
           T P STP  +  TK  G  SP +   +PPG
Sbjct: 126 TPPLSTPSNSNATKSSGLTSPLSVSTSPPG 155


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 193 TIPQSTPHGTYGTKYRGNRSPSADPEAPPG 104
           T P STP  +  TK  G  SP +   +PPG
Sbjct: 126 TPPLSTPSNSNATKSSGLTSPLSVSTSPPG 155


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 193 TIPQSTPHGTYGTKYRGNRSPSADPEAPPG 104
           T P STP  +  TK  G  SP +   +PPG
Sbjct: 126 TPPLSTPSNSNATKSSGLTSPLSVSTSPPG 155


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 193 TIPQSTPHGTYGTKYRGNRSPSADPEAPPG 104
           T P STP  +  TK  G  SP +   +PPG
Sbjct: 82  TPPLSTPSNSNATKSSGLTSPLSVSTSPPG 111


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 193 TIPQSTPHGTYGTKYRGNRSPSADPEAPPG 104
           T P STP  +  TK  G  SP +   +PPG
Sbjct: 126 TPPLSTPSNSNATKSSGLTSPLSVSTSPPG 155


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 193 TIPQSTPHGTYGTKYRGNRSPSADPEAPPG 104
           T P STP  +  TK  G  SP +   +PPG
Sbjct: 126 TPPLSTPSNSNATKSSGLTSPLSVSTSPPG 155


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 193 TIPQSTPHGTYGTKYRGNRSPSADPEAPPG 104
           T P STP  +  TK  G  SP +   +PPG
Sbjct: 126 TPPLSTPSNSNATKSSGLTSPLSVSTSPPG 155


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 275 CGHPQCVSRDLFCH 316
           CG+ +C+ ++LFC+
Sbjct: 116 CGNGECIDKELFCN 129


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 275 CGHPQCVSRDLFCH 316
           CG+ +C+ ++LFC+
Sbjct: 123 CGNGECIDKELFCN 136


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 275 CGHPQCVSRDLFCH 316
           CG   C+ R LFC+
Sbjct: 124 CGDGNCIERGLFCN 137


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 217 NEMLVSSRTIPQSTPH-GTYGTKYRGNRSPSADPEAPPGVKWLLEPIDIYNVNAP 56
           N  L ++  +P+ TP     G       +PS +  AP    +  +P+D+YN   P
Sbjct: 227 NPYLQAASMLPKPTPLVPQQGFNMERLLAPSTEVSAP----FFRQPLDLYNFRVP 277


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 274 LRSSTVRFQRSFLPRTIRLWNELPST 351
           L    VRF +     T++LW++L ST
Sbjct: 79  LEQFIVRFMKYHFFGTLKLWSQLFST 104


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 220 KNEMLVSSRTIPQSTPHGTYGTKYRGNRSPSADPEA 113
           ++  + S R     TPHG+  +      SPSA P A
Sbjct: 241 ESPQMQSYRPTGNITPHGSNTSSLITTPSPSASPLA 276


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 271 PLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMYFFKRGLW 399
           PL  S   F++  +  T++LW   PS+V    + + +   G W
Sbjct: 422 PLTESPY-FEKLDVKVTVQLWLGDPSSVLSHGHRVIYSTVGHW 463


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 17  YNTETLELISRGGWRI 64
           YN E +EL   GGW++
Sbjct: 299 YN-EIVELQKEGGWKV 313


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = -3

Query: 262 SMDELYSGGGRCDGKNEMLVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPPGVKWLLEP 83
           S  + +S     D   ++  S ++ PQ+ P   Y T    + + + +P  PP  + L+ P
Sbjct: 59  SGSDFHSSSPSSDTSQDLQHSYQS-PQTQPARFYSTPIVPHFAYNHNPLTPPNSEPLVSP 117


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -2

Query: 203 IISNNSSE--HSPWNIRYKIQREPKSL 129
           ++ N  S+  H PW    ++QR  K +
Sbjct: 448 VLKNMPSQYIHEPWTAPEQVQRAAKCI 474


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 304 SFLPRTIRLWNELPSTVFPERY 369
           +F+P+  +   ++P+   PERY
Sbjct: 18  AFMPKGNKEVFDVPNNFLPERY 39


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = -1

Query: 324 DGTWQKRSLETHCG*PQWL 268
           DG WQ+ +L  +     W+
Sbjct: 223 DGEWQRDNLNANSSITHWI 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,500
Number of Sequences: 336
Number of extensions: 2748
Number of successful extensions: 27
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)