Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1042
(408 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 28 0.49
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 1.1
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 26 2.6
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 26 2.6
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 3.4
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 3.4
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 6.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 6.0
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 6.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 24 7.9
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 28.3 bits (60), Expect = 0.49
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 204 YHLEQFLRALPMEHTVQNTEGTEVPPQTQ 118
Y LEQ L+ P+EH + TE + PP+ +
Sbjct: 86 YGLEQQLKTNPLEHPILITEPFDNPPENR 114
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 246 TPVAGGAMVKTRCWYHLEQFLRALPMEHTVQNTEGTEVPPQTQRLHLVL 100
TP G + T CW + ++L + + + VP + R+H+ L
Sbjct: 96 TPGFGDFIDNTSCWNTVAEYLDEQHERYLIHDQNSLRVPRKDTRVHVCL 144
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 331 IAGWYVAKKISGNA-LWMTAVAPGSMDELYSGGGRCDG 221
I +Y A + G+ + M + GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 75 MSMGSSNHLTPGGASGSAEGLR 140
+S S+ H+TPG GS E L+
Sbjct: 172 LSSSSNGHVTPGSKKGSRETLK 193
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 3.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 151 YRGNRSPSADPEAPPGVKWLLEPIDIYNVNAPPTS 47
YRG S ++ P APPG + +P Y+ PP++
Sbjct: 446 YRGLSSGASIPSAPPGFGY-QQPSFPYSPGFPPSA 479
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 302 LWKRTVDDRSGSR*YG*TLLRWRAVRW 222
+WK V+DRSG + G T W+ W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 6.0
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = -2
Query: 407 NTLHKPRLKKYMS*RSGNTVEGSSFHSRMVRGKKDLWKRTV 285
N LH ++S G T G F + K D W+ V
Sbjct: 250 NALHPNNALNFISNDDGETYNGCHFWTNFEIAKVDFWESEV 290
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect = 6.0
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -1
Query: 255 MNS-TPVAGGAMVKTRCWYHLEQFLRALPMEHTVQNTEGTEVPPQTQRLHLVLSGYWSP 82
MN+ TPV G + EQ PM+ Q GTE+ P ++S Y+ P
Sbjct: 1271 MNAQTPVNYGFAGGQDTSFGYEQQQMYSPMQQQQQQYYGTEMQPDMGYQQPMMSNYYDP 1329
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 6.0
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 227 APPATGVEFIHTTWSHCGHPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCTS 382
A P G E T H H + + C++ S S RCF +++C S
Sbjct: 684 ADPVVGNED-RTQCDHVFHVNAIFKPSRCYICSESVWGSELRCFHCSISCHS 734
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.2 bits (50), Expect = 7.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 187 ELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTV 291
E + IP+ R H+ R RVH ++PL V
Sbjct: 837 EKYTSIPSLRDLHKPTRPLKRVHWQRVDPLPGPNV 871
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,625
Number of Sequences: 5004
Number of extensions: 44184
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -