Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1042
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050...    29   1.4  
10_01_0144 - 1705429-1706250                                           28   2.5  
02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753     28   3.3  
01_06_1100 + 34530132-34530485,34530544-34530705                       28   3.3  
09_01_0060 - 942762-943448,943840-943867,944044-944077,944383-94...    27   4.3  
02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504     27   4.3  
07_03_0228 + 15406193-15406356,15406437-15406584                       27   5.7  
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023...    27   5.7  

>04_04_0161 +
           23203786-23203848,23204141-23204180,23204865-23205016,
           23205270-23205406,23206356-23206396,23206500-23207098,
           23207599-23207679,23208146-23208208,23209141-23209197
          Length = 410

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 206 GIISNNSSEHSPWNIRYKIQREPKSLRR 123
           G+ SN  +E +  ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188


>10_01_0144 - 1705429-1706250
          Length = 273

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 258 WMNSTPVAGGAMVKTRCWYHLEQFLRALP 172
           W+ +TP+A        CWY L   L  +P
Sbjct: 241 WLRTTPLALAPPSSAPCWYFLTTLLEIIP 269


>02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753
          Length = 232

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 235 GRCDGKNEMLVSSRTIPQSTPHGTYGTKYRGNRSPSADP-EAPP 107
           GRCDG+    + SR  P+ +   T G       +P   P  APP
Sbjct: 50  GRCDGRRHRCLLSRGWPRRSSPSTVGLDAAQQSAPVHTPLHAPP 93


>01_06_1100 + 34530132-34530485,34530544-34530705
          Length = 171

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 229 TARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVF 357
           +A+H    H   L+ L+  T + +   +   + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147


>09_01_0060 -
           942762-943448,943840-943867,944044-944077,944383-944437
          Length = 267

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 301 SGNALWMTAVAPGSMDELYSGGGRCDGKNEMLVSSRTIPQSTPHGT 164
           +G+ALW T V  G       GGG   G   +L +S  +    P GT
Sbjct: 159 TGHALWSTNVTAGVNSSASGGGG---GAMAVLANSSNLVLRLPDGT 201


>02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504
          Length = 331

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 290 CVSRDLFCHVPSGYGMSSPPRCFPSAMTCTSSNEAYGEY 406
           C S     H P+  G  SPP  FP+++   SS+  Y  +
Sbjct: 208 CYSNSSSSHDPAAAGHHSPPP-FPASLAACSSSHHYSSH 245


>07_03_0228 + 15406193-15406356,15406437-15406584
          Length = 103

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 314 GKKDLWKRTVDDRSGSR*YG*TLLRWRAV 228
           G    W+RTV  R GS   G T+ +W  V
Sbjct: 24  GSTGRWRRTVAPREGSGTAGSTMTKWHRV 52


>02_05_1276 +
           35397948-35398298,35398937-35401738,35402085-35402306,
           35402503-35402562,35402615-35402698,35402740-35402816,
           35403147-35403363
          Length = 1270

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 172 HGTYGTKYRGNRSPSADPEAPP 107
           HGT+ T    + + +ADP+APP
Sbjct: 708 HGTHATNKPFSTASNADPQAPP 729


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,717
Number of Sequences: 37544
Number of extensions: 352460
Number of successful extensions: 1105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)