Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1042
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical...    28   3.0  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AC024841-2|AAK68540.1|  300|Caenorhabditis elegans Hypothetical ...    27   6.9  
AC024841-1|AAK68541.1|  300|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guany...    26   9.1  

>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMT 373
           HPQ V++ +  HVP G    +PP+  P+  T
Sbjct: 162 HPQIVNQPMHPHVPVGSQNYNPPQFVPAPPT 192


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 266 WSHCGHPQCVSRDLFCH 316
           WS C HP CV+  +F H
Sbjct: 12  WSRCVHPSCVAWVIFIH 28


>AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical
           protein Y94H6A.1 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 178 CSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPST 351
           CS E F+ +    F  +TA HR+      +EP+ S  V  +   L + I +++E PST
Sbjct: 332 CSAEWFQELSGLSFEAQTAVHRAISE--IMEPMDSLDVSIEELVLMKFIMMFSE-PST 386


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/54 (27%), Positives = 20/54 (37%)
 Frame = +2

Query: 209 HLVFTIAPPATGVEFIHTTWSHCGHPQCVSRDLFCHVPSGYGMSSPPRCFPSAM 370
           H +  +  PA   +       HC   QCV+R  + H    Y     P C P  M
Sbjct: 264 HPLVLVVHPAPQAQCSPACQPHCSQ-QCVARLQYMHESQFYNHILEPSCRPDCM 316


>AC024841-2|AAK68540.1|  300|Caenorhabditis elegans Hypothetical
           protein Y59H11AM.2 protein.
          Length = 300

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 304 ISGNALWMTAVAPGSMDELYSGG 236
           +S +A+W+ A   G + +LY+GG
Sbjct: 262 LSASAIWLAAARSGIVAKLYNGG 284


>AC024841-1|AAK68541.1|  300|Caenorhabditis elegans Hypothetical
           protein Y59H11AM.3 protein.
          Length = 300

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 304 ISGNALWMTAVAPGSMDELYSGG 236
           +S +A+W+ A   G + +LY+GG
Sbjct: 262 LSASAIWLAAARSGIVAKLYNGG 284


>Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical
           protein F30A10.6 protein.
          Length = 591

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 166 FHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSF 309
           FH EC    +  I   R   + ++  S    +YL P    T RFQR F
Sbjct: 350 FHKECHSMQWHRIDLLR--EQLSQEISSFGYFYLSPNSMETSRFQRGF 395


>Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 383 KKYMS*RSGNTVEGSSFHSRMVRGKKD 303
           +K  S  +G++V  SS HS  +R KKD
Sbjct: 893 EKKRSSMAGSSVTSSSAHSHSIRSKKD 919


>Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 383 KKYMS*RSGNTVEGSSFHSRMVRGKKD 303
           +K  S  +G++V  SS HS  +R KKD
Sbjct: 893 EKKRSSMAGSSVTSSSAHSHSIRSKKD 919


>AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guanylyl
           cyclase GCY-33 protein.
          Length = 945

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 383 KKYMS*RSGNTVEGSSFHSRMVRGKKD 303
           +K  S  +G++V  SS HS  +R KKD
Sbjct: 893 EKKRSSMAGSSVTSSSAHSHSIRSKKD 919


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,267,384
Number of Sequences: 27780
Number of extensions: 261683
Number of successful extensions: 770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)