Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1042
(408 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10000.2 68417.m01637 expressed protein 28 2.1
At4g10000.1 68417.m01636 expressed protein 28 2.1
At2g32620.1 68415.m03982 cellulose synthase family protein simil... 28 2.1
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 27 3.7
At4g23640.1 68417.m03404 potassium transporter / tiny root hair ... 27 3.7
At3g61310.1 68416.m06861 DNA-binding family protein contains a A... 27 3.7
At2g46760.1 68415.m05834 FAD-binding domain-containing protein s... 27 4.8
At2g46750.1 68415.m05833 FAD-binding domain-containing protein l... 27 4.8
At4g10950.1 68417.m01780 GDSL-motif lipase/hydrolase family prot... 27 6.4
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 26 8.5
At3g29670.1 68416.m03740 transferase family protein similar to a... 26 8.5
At3g16200.1 68416.m02045 expressed protein 26 8.5
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 26 8.5
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 26 8.5
>At4g10000.2 68417.m01637 expressed protein
Length = 333
Score = 28.3 bits (60), Expect = 2.1
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = -3
Query: 403 LSISLV*RSTCHSARETPWRGAHSIAGWYVAKKISGNALWMTAVAPGSMDELYSGGGRCD 224
+SIS+V S CH P HS +K+ISGN W+ LY +
Sbjct: 1 MSISVVDSSLCHPTASFPSSMVHSNR---FSKRISGNGNWVR-----ERRRLYVKSSNSE 52
Query: 223 GKNE 212
GK E
Sbjct: 53 GKKE 56
>At4g10000.1 68417.m01636 expressed protein
Length = 333
Score = 28.3 bits (60), Expect = 2.1
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = -3
Query: 403 LSISLV*RSTCHSARETPWRGAHSIAGWYVAKKISGNALWMTAVAPGSMDELYSGGGRCD 224
+SIS+V S CH P HS +K+ISGN W+ LY +
Sbjct: 1 MSISVVDSSLCHPTASFPSSMVHSNR---FSKRISGNGNWVR-----ERRRLYVKSSNSE 52
Query: 223 GKNE 212
GK E
Sbjct: 53 GKKE 56
>At2g32620.1 68415.m03982 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -4
[gi:9622880], -9 [gi:9622890]
Length = 757
Score = 28.3 bits (60), Expect = 2.1
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = -3
Query: 337 HSIAGWYVAK---KISGNALWMTAVAPGSMDELYSGGGRCDGKNEMLVSSRTIPQSTPHG 167
HSI WYV++ +I + W+ ++ D + G KN LVS +T+P T G
Sbjct: 593 HSIQSWYVSQSFWRIVATSSWLFSI----FDIILKLLGL--SKNVFLVSKKTMPVETMSG 646
Query: 166 T-YGTKYRGNRSPSADPEAPPGVKWLLEPIDIYNVN 62
+ G R + P++ G + L I VN
Sbjct: 647 SGIGPSQREDDGPNSGKTEFDGSLYFLPGTFIVLVN 682
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 151 ILYRMFHGECSEELFEMIPASRFYH 225
I +MFH EC E FE+I S +H
Sbjct: 108 ICEKMFHKECVESPFEIIHPSHPFH 132
>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
protein (TRH1) identical to tiny root hair 1 protein
[Arabidopsis thaliana] gi|11181958|emb|CAC16137;
KUP/HAK/KT Transporter family member, PMID:11500563;
identical to cDNA mRNA for tiny root hair 1 protein
(trh1) GI:11181957
Length = 775
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 119 WVCGGTSVPSVFCTVCSMGSALRNCSR*YQHLVFTIAPPATGVEFIHTTW 268
WV G +P + V + A+ C R +H+ F + F+ TTW
Sbjct: 374 WVLGQIYIPEINWVVMILTLAVTICFRDTRHIAFAFGLACMTLAFV-TTW 422
>At3g61310.1 68416.m06861 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 354
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 171 MEHTVQNTEGTE--VPPQTQRLHLVLSGYWSP*TSTT*MRHPPRDI 40
+E+ NT T VP Q+Q + G WS + + M HP DI
Sbjct: 304 LENNNDNTAATSPPVPQQSQNIVQTPVGIWSTGSRSMDMHHPHMDI 349
>At2g46760.1 68415.m05834 FAD-binding domain-containing protein
strong similarity to At1g32300, At2g46740, At2g46750,
At5g56490; contains PF01565: FAD binding domain
Length = 603
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 287 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTCTSSNEAY 397
+CVS + C V + YG FP TC ++N AY
Sbjct: 43 KCVSGNTNCTVTNSYG------AFPDRSTCRAANVAY 73
>At2g46750.1 68415.m05833 FAD-binding domain-containing protein low
similarity to SP|P58710 L-gulonolactone oxidase (EC
1.1.3.8) {Mus musculus}; contains Pfam profile PF01565:
FAD binding domain
Length = 591
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 287 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTCTSSNEAY 397
+CVS + C V + YG FP TC ++N AY
Sbjct: 35 KCVSGNTNCTVTNSYG------AFPDRSTCRAANVAY 65
>At4g10950.1 68417.m01780 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL1 GI:15054382 from
[Arabidopsis thaliana]; contains Pfam profile PF00657:
GDSL-like Lipase/Acylhydrolase
Length = 400
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 157 YRMFHGECSEELFEMIPASRFYHR 228
YR +GEC+EE+ MI S F R
Sbjct: 269 YRSQNGECAEEVNSMIMESNFVMR 292
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 202 SSRTIPQSTPHGTYGTKYRGNRSPSADPEAPP 107
SS P ++P G+ K SP+ P APP
Sbjct: 190 SSAVSPATSPPGSMAPKSGSPVSPTTSPPAPP 221
>At3g29670.1 68416.m03740 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 451
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 190 LFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRT 321
LF+ + FY T R H L L+ S R++LP T
Sbjct: 38 LFQPVKRVFFYELTESTRDHFHSIILPKLKDSLSLILRNYLPLT 81
>At3g16200.1 68416.m02045 expressed protein
Length = 452
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -2
Query: 239 WRAVRW*KRDAGIISNNSSEHSPWNIRYKIQREPKSLRRPR 117
W RW K D I S HS W +R + P PR
Sbjct: 173 WFMARWLKPDMMIESGAFKGHSTWVLRQAMPDTPMISLTPR 213
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 251 FIHTTWSHCGHPQCVSRDLFCHVPSG-YGMSSPPRCFPSAMTCTSSNEAYG 400
F T+ S C P S D F H +G + + P F S +S+ ++G
Sbjct: 117 FPQTSPSSCSTPSSFSPDSFSHSNTGPWSIPQPSPVFSSIAPASSALSSFG 167
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 26.2 bits (55), Expect = 8.5
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = -3
Query: 268 PGSMDELYSGGGRCD----GKNEMLVSSRTIPQST--PHGTYGTKYRGNRS-PSADPEAP 110
P S +++SGGGR + + + P ST P G Y GN S PS+ P P
Sbjct: 229 PSSPSQIHSGGGRSPPLPLPPGQFTAGNASFPSSTQPPPGQY---MAGNASFPSSTP-PP 284
Query: 109 PG 104
PG
Sbjct: 285 PG 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,892,178
Number of Sequences: 28952
Number of extensions: 254873
Number of successful extensions: 762
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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