Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1040
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   1.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.4  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   5.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   5.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   7.2  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   9.5  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +3

Query: 168 KEVVDIPVKVIVEEIKPSLKSDLEKFEVPDENEEIKRPLVDLRNPGPP------QHQEHE 329
           KEV D+P   + E  KP       +F     NE+I  PL D+  P         +H+   
Sbjct: 25  KEVFDVPNNFLPERYKPIGVQIANRFG-EQANEKI--PLKDITPPDLEGILDLGRHENFS 81

Query: 330 TQNPEHHEDAEKIV 371
              P+H + A K++
Sbjct: 82  LFIPKHRKVAGKLI 95


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 564  PADTIAAPSVEETQNKASFETIESGLKSLETNFN 665
            P+DT    + ++T+  A+ ETI  GLK   TN++
Sbjct: 1142 PSDTWFDENTKDTKITAASETILHGLKKY-TNYS 1174


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 23/144 (15%), Positives = 62/144 (43%), Gaps = 2/144 (1%)
 Frame = +3

Query: 81  VVENLSSEQELIDQANTIKDIDNSLRANKKEVVDIPVKVIVEEIKPSLKSD--LEKFEVP 254
           +V ++  +Q    + + IK+I         + +  P+K++VE+ +    SD   E+ +  
Sbjct: 179 IVLHMKEDQTEFLEEHKIKEIVKK----HSQFIGYPIKLVVEKEREKELSDDEAEEEKKE 234

Query: 255 DENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEV 434
           +E E+  +    + + G  + ++ + ++ +  +  ++  +  +    T  I  R      
Sbjct: 235 EEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEELNKTKPIWTRNADDIS 294

Query: 435 SDGIGKWYARTEQINELQASLQHF 506
            +  G++Y       E   +++HF
Sbjct: 295 QEEYGEFYKSLTNDWEDHLAVKHF 318


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 279 PLVDLRNPGPPQHQEHETQNPEHHED 356
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 279 PLVDLRNPGPPQHQEHETQNPEHHED 356
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 279 PLVDLRNPGPPQHQEHETQNPEHHED 356
           P ++ +N   P  + HE     HHE+
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEE 121


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 315 HQEHETQNPEHHE 353
           HQ+H  QN  H E
Sbjct: 314 HQQHHQQNMSHEE 326


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 88  STTFKGLSSASGTLSGMEAARAASTN 11
           STT + LSS + + S   +   A TN
Sbjct: 160 STTSQNLSSPASSTSSTSSTEKAGTN 185


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 379 SKMTLTQRKSLFVKASRK 432
           +KMTLTQ  + F  A R+
Sbjct: 124 TKMTLTQVSTWFANARRR 141


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,905
Number of Sequences: 336
Number of extensions: 2644
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)