Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1039
         (331 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    36   0.13 
UniRef50_UPI0000DA2C14 Cluster: PREDICTED: hypothetical protein;...    33   1.2  
UniRef50_A0FQX5 Cluster: Putative uncharacterized protein precur...    33   1.6  
UniRef50_Q4PIA4 Cluster: Putative uncharacterized protein; n=1; ...    33   1.6  
UniRef50_A5C0U9 Cluster: Putative uncharacterized protein; n=1; ...    32   2.1  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    32   2.1  
UniRef50_Q03TF4 Cluster: Predicted membrane protein; n=1; Lactob...    31   3.7  
UniRef50_A0D4X6 Cluster: Chromosome undetermined scaffold_38, wh...    31   4.9  
UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ...    30   8.5  
UniRef50_Q4DJR4 Cluster: TRNA exportin, putative; n=2; Trypanoso...    30   8.5  

>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 287 PRGGARYPIRPIVSR 331
           PRGGARYPIRPIVSR
Sbjct: 259 PRGGARYPIRPIVSR 273


>UniRef50_UPI0000DA2C14 Cluster: PREDICTED: hypothetical protein;
           n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 347

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 227 HLVLMATGVHRHPQRTCRHPP 289
           H V  ++ +HRHP+ TCRH P
Sbjct: 108 HEVCPSSAIHRHPRMTCRHSP 128


>UniRef50_A0FQX5 Cluster: Putative uncharacterized protein
           precursor; n=1; Burkholderia phymatum STM815|Rep:
           Putative uncharacterized protein precursor -
           Burkholderia phymatum STM815
          Length = 215

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 188 FYYLLRWMNELTAHLVLMATGVHRHPQRTCRHPPRGGARY 307
           F  L+ ++N L   LV  +  +H HP+R  R+ P G  RY
Sbjct: 30  FAELINYINALKVRLVPRSRWLHPHPERRTRNRPDGHFRY 69


>UniRef50_Q4PIA4 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 323

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 322 YRANWVPGPPSRWMAACTLWMSMDSGSH 239
           YR    PG P RW+ AC  W S+  G+H
Sbjct: 166 YRETGFPGAPGRWVGAC--WESLYGGNH 191


>UniRef50_A5C0U9 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 298

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
 Frame = +2

Query: 197 LLRWMNELT-----AHLVLMATGVHRHPQRTCRHPPRGG-ARYPI 313
           LL W  EL        L LM  G HR+P++     PRG  ARYPI
Sbjct: 183 LLFWYGELVFFRFQGPLPLMTRGAHRYPEQLYSDSPRGHVARYPI 227


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 191 YYLLRWMNELTAHLVLMATGVHRH 262
           + LLRW++ELTAHLVL      RH
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSPRH 177


>UniRef50_Q03TF4 Cluster: Predicted membrane protein; n=1;
           Lactobacillus brevis ATCC 367|Rep: Predicted membrane
           protein - Lactobacillus brevis (strain ATCC 367 / JCM
           1170)
          Length = 906

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +2

Query: 107 IKNSILTTNYCALIIPQIHFLTQFFALFYYLLRWMNELTAHLVLMATGVHR 259
           ++++ L + +  L+    + L  F A+++Y + W++ L   L L+A G+HR
Sbjct: 133 LRHAFLKSGWSMLLFTTAYSLCGFVAMYFYDMMWLDAL-IWLPLVALGLHR 182


>UniRef50_A0D4X6 Cluster: Chromosome undetermined scaffold_38, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_38,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 742

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 107 IKNSIL-TTNYCALIIPQIHFLTQFFALFYYLLRWMNELTAHLVLMATGVHRHPQRTCRH 283
           +K SIL       L+ PQI +  +   + Y+LL + +E +A+++L A   H  P +    
Sbjct: 175 VKTSILRVAGTLLLLYPQIGYSHEIVLITYFLLCFASEASAYILLTAIYAHILPSQLY-- 232

Query: 284 PPRGGARYPI 313
            P+   +Y +
Sbjct: 233 -PKANTKYDL 241


>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
           uncultured bacterium|Rep: Non-ribosomal peptide
           synthetase - uncultured bacterium
          Length = 338

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 329 DSL*GELGTGPPLE 288
           DSL GELGTGPPLE
Sbjct: 279 DSLYGELGTGPPLE 292


>UniRef50_Q4DJR4 Cluster: TRNA exportin, putative; n=2; Trypanosoma
           cruzi|Rep: TRNA exportin, putative - Trypanosoma cruzi
          Length = 1148

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 137 CALI-IPQIHFLTQFFALFYYLLRWMNELTAHLVLMATGV-HRHPQRTCR 280
           CA++ +     L +++A F Y   W+  L   L+L+  GV +RHP+   R
Sbjct: 606 CAVVHLSYFEVLDRYYAFFIYHSEWIPLLLQRLLLLPYGVTNRHPRVRAR 655


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,748,813
Number of Sequences: 1657284
Number of extensions: 5099984
Number of successful extensions: 12424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12423
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 9961543501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)