Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1039
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0060 + 17576427-17578781                                         28   1.5  
08_01_0595 + 5250093-5250219,5251579-5251624,5252732-5252825           27   2.7  
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229     27   4.7  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    26   8.3  
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381...    26   8.3  

>05_04_0060 + 17576427-17578781
          Length = 784

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 322 YRANWVPGPPSRWMAACT 269
           +R   +P PP+RW  ACT
Sbjct: 180 FRGEGMPPPPARWKGACT 197


>08_01_0595 + 5250093-5250219,5251579-5251624,5252732-5252825
          Length = 88

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 197 LLRWMNELTAHLVLMATGVHRHPQRTCRHPP-RGGARYPI 313
           L+RW   L+  L L  +    HP +  RHPP  GG  YP+
Sbjct: 10  LVRWQLSLSLSLSLAGSLGPVHPAQQ-RHPPWHGGNCYPV 48


>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
          Length = 212

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 218 LTAHLVLMATGVHRHPQRTCRHPPRGGAR 304
           LTA  +L AT  HR      R PPR G R
Sbjct: 128 LTATSLLAATPGHRRDCHRARPPPRPGGR 156


>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
            28807638-28807763,28807819-28807968,28808497-28808541,
            28808612-28808875,28809843-28809887,28810395-28810430,
            28812048-28812816,28813063-28813925,28814024-28814182,
            28814440-28814558,28815356-28815417,28816677-28816805,
            28817395-28817460,28817757-28817890,28818025-28818162,
            28818630-28818889,28818996-28819107,28819590-28819675,
            28820655-28820735,28822841-28822928,28823222-28823260,
            28823847-28823964,28824063-28824130,28824884-28824981,
            28825238-28825397,28825691-28825816,28825876-28825945,
            28826046-28826449
          Length = 1664

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 212  NELTAHLVLMATGVHRHPQRTCRHPPRGGARYPIRPIVS 328
            N  TAH+ L  +   R P+   R   +  A  P+  +V+
Sbjct: 1615 NHFTAHIPLRESSADRRPRENKRRERKSKATMPVSTLVT 1653


>02_05_0510 +
           29637160-29637506,29637714-29637775,29638047-29638161,
           29638296-29638419,29638604-29638684,29639122-29639463,
           29639562-29639728,29639810-29640639,29641103-29642568
          Length = 1177

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 322 YRANWVPGPPSRWMAACT 269
           +RA+ V G P++W+ AC+
Sbjct: 93  FRADQVSGDPAQWLQACS 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,721,570
Number of Sequences: 37544
Number of extensions: 145905
Number of successful extensions: 347
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)