Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1033
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AF067937-1|AAF99912.1|  533|Caenorhabditis elegans Hypothetical ...    25   10.0 

>Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical
           protein M28.7 protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 93  IGRVMVPTRADSQEVLPPVITQ 28
           I R+  P+R DS EV+ PV+ +
Sbjct: 195 ISRLQNPSRGDSGEVMEPVVVR 216


>AF067937-1|AAF99912.1|  533|Caenorhabditis elegans Hypothetical
           protein F22F7.4 protein.
          Length = 533

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 130 PSNRNVLLLHGRNR*GDGTYSRGLTRGPTTSYYANNNF 17
           P   N+  +H      D TY  G    P T +YA N+F
Sbjct: 492 PQRENIPCIHS-----DATYHSGPKMWPITYHYATNSF 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,457,882
Number of Sequences: 27780
Number of extensions: 165031
Number of successful extensions: 291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)