Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1032
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0023 + 13839421-13840326                                         32   0.55 
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35...    31   1.3  
09_02_0030 + 3115502-3115750,3115835-3116104,3116193-3116633,311...    29   3.9  
12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912...    28   6.8  

>03_03_0023 + 13839421-13840326
          Length = 301

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = -1

Query: 653 PKATIVRGRRPIKSI*KQSVIKPERQVTCGQRRSHKDAQTRPLDVRRRAGRTPECSQDVL 474
           P +  V G  P  +   + V+ P   V  G       A   P D+RR AG  PE     +
Sbjct: 36  PTSLAVPGFPPAPAPAPEHVLLPSPSVAAGAAEVLLAAGVPPADLRRAAGMCPELLSVPV 95

Query: 473 GNCLYRIRFCRDK 435
           G     +RF  D+
Sbjct: 96  GTITAALRFLTDE 108


>12_01_0045 -
           354825-355504,355602-355776,355847-355927,357266-357498,
           357921-358104
          Length = 450

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 145 RSNVKSVRSPLSIRAFTTLT-DGTAPCEPARVGTTTLFISVRP 20
           RSN    R+PL + A   L  + T P EP  +G   LF+ V P
Sbjct: 57  RSNRSGSRNPLPVAAVRLLLLNTTTPSEPQLIGGYLLFLGVMP 99


>09_02_0030 +
           3115502-3115750,3115835-3116104,3116193-3116633,
           3116697-3116783,3116872-3116973,3117532-3117631,
           3117791-3117807
          Length = 421

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 507 GPAANVEWPCLCVLVATPLTASDLSLW 587
           GP  +V W C    +A  L +SD+ LW
Sbjct: 140 GPITSVSWSCDGQWIAVGLNSSDIQLW 166


>12_02_0928 +
           24488891-24489675,24490369-24490421,24490479-24491229,
           24491322-24491533,24491780-24492570,24492686-24492784
          Length = 896

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 472 PKTSWLHSGVRPARRRTSSGLVCASLWLRL*PQVTCLSGLITDCFHIDL 618
           P   WL +  R +R  T S      L  R+   + CLSG + +CF +DL
Sbjct: 434 PPKIWLSAKNRLSRGETISDSHETKLLERMAASIECLSGKVRECF-LDL 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,435,448
Number of Sequences: 37544
Number of extensions: 387966
Number of successful extensions: 801
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)