Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1031
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 33 0.059
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.10
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 31 0.24
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 30 0.42
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.55
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 29 0.73
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 28 1.3
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 28 1.3
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.7
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.2
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 3.0
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 3.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 3.9
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 3.9
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.2
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 5.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 5.2
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 6.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 6.8
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 9.0
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 32.7 bits (71), Expect = 0.059
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
Frame = +1
Query: 400 SEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNM 579
S P E+ + +VE P+ E + +V E E K AT D +P
Sbjct: 447 SSSPTKESTTRKSEVEPPSPSKEIKSSHF--SVPEFKFEPKTEAT-----TDKKLNVPKF 499
Query: 580 VKKIDLAPNVESDAAAVPEIKTSEAADAP-KLADNP-VDEDKPADISPDAPKAEAKSADD 753
K +V+++ E K + A P K + P + E+KP+ S +PK E D
Sbjct: 500 EFKPTATADVQTNRLKENEPKPTFFAQLPSKTQETPSITENKPSFFSQLSPKREETEKKD 559
Query: 754 SATTA 768
+A +A
Sbjct: 560 NAPSA 564
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 31.9 bits (69), Expect = 0.10
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)
Frame = +1
Query: 394 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 570
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 571 PNMVKKIDLAPNVESDAAAVPEIKTSEAADAPKLADNPVDEDKPADISPDAPKAEAKSAD 750
VKK P+ E E+ AP V+E +P +S D A +
Sbjct: 506 SEDVKK---EPSEEKKL----EVSDEAPKAAPLAESKKVEEKEPFYVSKDKKDISAVNLA 558
Query: 751 D 753
D
Sbjct: 559 D 559
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 30.7 bits (66), Expect = 0.24
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 466 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKT 645
E+S + +E+SK KP+ TD N K+I++A S A P+ K
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPK-KA 81
Query: 646 SEAADAPKLADNPVD-EDKPADISPDAPKA 732
+ AA AP A + VD + A ++P+ KA
Sbjct: 82 TPAAVAPVEATSAVDTSEAVASMTPNKRKA 111
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 29.9 bits (64), Expect = 0.42
Identities = 27/118 (22%), Positives = 49/118 (41%)
Frame = +1
Query: 397 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 576
SS+ + +S + E+ ++ K A+ K KP AT S D ++P+
Sbjct: 1315 SSDSGKSRKRSQSVDSEDAGSKKPVKKIAASAS-GRGRKTNKPVATTIFSSDDEDDLLPS 1373
Query: 577 MVKKIDLAPNVESDAAAVPEIKTSEAADAPKLADNPVDEDKPADISPDAPKAEAKSAD 750
+K P+ + A + K +A+ K + D+D S PKA + +A+
Sbjct: 1374 SLK-----PSTITSTKASAKNKGKKASSVKKQSPEDDDDDFIIPGSSSTPKASSTNAE 1426
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.55
Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Frame = +1
Query: 391 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS---ADSA 561
AK S D K + K + A+ PE SK V+ KEE S +++E S ++S+
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESS 99
Query: 562 AIIPNMVKKIDLAPNVESDAAAVPE---IKTSEAADAPKLADNPVDEDKPADISPDAPKA 732
+ + + ES ++ E +KT E ++ + + + ++ + +
Sbjct: 100 SSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEK 159
Query: 733 EAKSADDSATTA 768
+ S+D S+ ++
Sbjct: 160 KESSSDSSSESS 171
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 29.1 bits (62), Expect = 0.73
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Frame = +1
Query: 400 SEIPDAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 576
S IP E +I VEE +P EV+ T A +E+ P D+E +A +
Sbjct: 142 SPIPSPETIHKNIDVEEKETIEPTTPVKEVETT-AHAEEEKGPLTPDSEYAA--RQLTEE 198
Query: 577 MVKKIDLAPNVESDAAAVPEIKTSEAADAPKLADNPVDEDKPADISPDAPKA-EAKSADD 753
+ K V+ V + D + V KP +++ D ++ E K +
Sbjct: 199 LANKSSQEEGVDKQLRVVEATEKEHEEDG---NEENVTVTKPVEVATDQVESKEVKKKEV 255
Query: 754 SATT 765
S TT
Sbjct: 256 SETT 259
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +1
Query: 478 TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTSEAA 657
T+ A+ E ++ S+ + SA A I N+ DL PN + + + ++
Sbjct: 42 TDKNASNQEQGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTK 101
Query: 658 DAPKLADNPVDE 693
PK+ D D+
Sbjct: 102 HKPKIGDIAADD 113
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 28.3 bits (60), Expect = 1.3
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = +1
Query: 472 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEI-KTS 648
+K+E A +A EE S + A K + V SDA V + KT+
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311
Query: 649 EAADAPKLADNPVDEDKPADISPDAPKAEAKSADDSATTA 768
E AD + +DE KPAD + + S S+ T+
Sbjct: 312 EDADEEPETEENLDEFKPADGADNEDSKSLVSHISSSNTS 351
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 5/123 (4%)
Frame = +1
Query: 409 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEI-----SKEEKPSATDAEGSADSAAIIP 573
P +AK+ E Q + T + A + + E A A S +I P
Sbjct: 38 PQRKAKTPSNHATEELQQSSTNSTTLPTQEAAVETNASASHETSFALPTTSPAASLSISP 97
Query: 574 NMVKKIDLAPNVESDAAAVPEIKTSEAADAPKLADNPVDEDKPADISPDAPKAEAKSADD 753
+ PNVE+D ++ + ++P + P I+ + P + +
Sbjct: 98 TKSAAVSSEPNVEADVKSLSSTPAAPQLNSPSHSYEPTTFPSTTSITENLPTIDPTRSTR 157
Query: 754 SAT 762
S++
Sbjct: 158 SSS 160
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 446 KNQLLSLKIQKLKYKLPSLKFQKKKNL 526
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 568 IPNMVKKIDLAPNVESDAAAVPEIKTSEAADAPKLADNPVDEDKPADISPDAPKAEAKSA 747
+ VK + L P V + + E+K E A +LA +K A APK+ +K
Sbjct: 9 VTQAVKALVLDP-VTGEQVSKTELKKREKQRARELAKAKKQAEKAASAPVAAPKSSSKKE 67
Query: 748 DD 753
+D
Sbjct: 68 ED 69
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 3.0
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Frame = +1
Query: 439 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESD 618
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 619 AAAVPEI---KTSEAADAPKLADNPVDEDK 699
+ E+ KT DAP +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 3.9
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +1
Query: 397 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 576
SS DA AKS + EPA +P + + ++T + EK + TD +
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSST--------E 948
Query: 577 MVKKIDLAPNVESDAAAVPEIK--TSEAADAPKLADNPVDEDKP 702
VK+ A +V D E+K SE D+ +L P E P
Sbjct: 949 PVKRQKTA-DVNDDVGE-EEVKQSVSEQVDSAQLTSEPKSESLP 990
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/98 (23%), Positives = 36/98 (36%)
Frame = +1
Query: 463 PEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIK 642
P D E+ P D + + N + K+ ++ N ++++A E
Sbjct: 379 PSDDVENQSDQALEVLSLTNPPKIDNASADTTLHKETNKIDKLYVSEN-KAESAVASESS 437
Query: 643 TSEAADAPKLADNPVDEDKPADISPDAPKAEAKSADDS 756
SE A K P E+KP S P A+DS
Sbjct: 438 LSEGTLALKA---PAPENKPEKSSTSKPPVPENKAEDS 472
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 330 VFWGYIVLFGLWYSGYLVVTNW 265
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 412 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 558
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 619 AAAVPEIKTSEAADAPKLADNPVDEDKPADISPDAPKAEAKSAD 750
+++V + TS+ P+L N + + I+P P ++S D
Sbjct: 117 SSSVEHLHTSKHLKGPRLPKNIIKSSEDVQIAPVTPPVHSRSFD 160
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 622 AAVPEIKTSEAADAPKL---ADNPVDEDKPADISPDAPKAEAK 741
+++P +S + D P + +D+P+D D P ++P + AK
Sbjct: 132 SSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAK 174
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 448 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAA 627
EP +P+ S T +I+ + + + + GS A++ +++K+ID+ ++ES A+
Sbjct: 483 EPFKRPQSSSAPTILT--DINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVAS 540
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 418 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 555
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 415 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 552
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 400 SEIPDAEAKSAD-IKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 576
+E+P K +K ++P ++P + +T+V+ A ++E +P +D + +
Sbjct: 227 AELPTEPPKQTRFLKSQQPTSEP-NVETQVEEQPALENEESEPEPSDDQF---------D 276
Query: 577 MVKKIDLAPNVE 612
+V+++D+ PNV+
Sbjct: 277 LVEEVDVLPNVD 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.306 0.123 0.330
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,883
Number of Sequences: 5004
Number of extensions: 38701
Number of successful extensions: 133
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
- SilkBase 1999-2023 -