Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1030
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       27   2.1  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    26   4.9  

>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = +1

Query: 19  SVRLSSVANLTASNSALVVTNRSAVVSCDILSST*SVRGTINAAGRIEVCLDNSMRRMGR 198
           ++ L+   N   SNS+  V   +   +C   +S  + + T  +  R +V L  +   +  
Sbjct: 396 AISLTESFNSPVSNSSPNVPINNFTSTCAFENSHLNFQITPKSKTRDQVVLLATYTNLSP 455

Query: 199 WSRLE-LLSVINLPQTCNLVLRPRA*LRLGDLR 294
           +  +E L S I +P+  NLVL+P++   L  L+
Sbjct: 456 YDTVENLQSFIAVPKKYNLVLQPQSGTNLSPLQ 488


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/46 (23%), Positives = 28/46 (60%)
 Frame = -1

Query: 704 IHVTQKNNLCR*LKERYFVVYNIIYISRKLTVYIIKFINNTELYSV 567
           + ++   NL   L+E+YF V +++Y S+++ +  +K  + ++ + V
Sbjct: 150 MELSSSTNLLETLQEKYFGVEDVLYTSKRI-IKSLKLSDRSDYFLV 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,705
Number of Sequences: 5004
Number of extensions: 56945
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)