Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1028
         (761 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9YHD0 Cluster: Otx; n=5; Coelomata|Rep: Otx - Petromyz...    37   0.63 
UniRef50_Q4SB00 Cluster: Chromosome undetermined SCAF14678, whol...    33   7.7  
UniRef50_Q0DC99 Cluster: Os06g0366800 protein; n=2; Oryza sativa...    33   7.7  

>UniRef50_Q9YHD0 Cluster: Otx; n=5; Coelomata|Rep: Otx - Petromyzon
           marinus (Sea lamprey)
          Length = 377

 Score = 36.7 bits (81), Expect = 0.63
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 134 CRKRRLRAKASPKPIQPRPQVNKSIPKEGCPQAGG 238
           CR+++ +A +   P +PRP   KS P++G P  GG
Sbjct: 93  CRQQQQQAASGGGPAKPRPPKKKSAPQDGTPDGGG 127


>UniRef50_Q4SB00 Cluster: Chromosome undetermined SCAF14678, whole
           genome shotgun sequence; n=8; Bilateria|Rep: Chromosome
           undetermined SCAF14678, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 2224

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 98  PKNTPKPNLTHG-CRKRRLRAKASPKPIQPRPQ 193
           PK +P  N THG  RKRR  A   PK +  +PQ
Sbjct: 221 PKRSPPSNNTHGGLRKRRRGASGQPKTLPNKPQ 253


>UniRef50_Q0DC99 Cluster: Os06g0366800 protein; n=2; Oryza sativa
           (japonica cultivar-group)|Rep: Os06g0366800 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 461

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 110 PKPNLTHGCRKRRLRAKASPKPIQPRPQVNKSIPKEGCPQA 232
           P+P+     R+RRL A   P  I+P P   + IP  G P A
Sbjct: 212 PQPSPPPAARRRRLLASPPPAAIRPIPAAIRPIPAAGRPSA 252


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,404,729
Number of Sequences: 1657284
Number of extensions: 14579727
Number of successful extensions: 32242
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32212
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)