Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1028
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    30   0.31 
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    26   6.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   8.9  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/65 (29%), Positives = 25/65 (38%)
 Frame = +2

Query: 104 NTPKPNLTHGCRKRRLRAKASPKPIQPRPQVNKSIPKEGCPQAGGYKNVAKT*NTLSDAS 283
           N P  N     R  R + K  P    P P V  S+P    P   G + +A      S  +
Sbjct: 400 NPPNRNQAFSARDSR-QEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIA 458

Query: 284 VKTTA 298
           V TT+
Sbjct: 459 VPTTS 463


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 18 SILLYHTPFPCSLFSYTYRL 77
          S++L  T FP S FSY+Y L
Sbjct: 11 SLILSDTAFPLSSFSYSYGL 30


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 551 HHPHVSKSHSVTRIQQFQSKFSVAYFFI 468
           H+PH+S+  + +  Q+  ++  V Y++I
Sbjct: 138 HYPHISRPRTSSDSQKMYTRAPVDYYYI 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,131
Number of Sequences: 5004
Number of extensions: 59791
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)