Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1028
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0643 - 21461123-21461902                                         29   3.1  
06_03_0189 - 17697779-17698939                                         28   7.1  
06_02_0035 + 10816723-10819497,10819964-10820011                       28   9.3  

>12_02_0643 - 21461123-21461902
          Length = 259

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +2

Query: 98  PKNTPKPNLTHGCRKRRLRAKASPKPIQPRPQVNKSIPKEGCPQ 229
           P  TP P         R R +  P P +PRP      P  GCP+
Sbjct: 200 PSRTPPPERRESPSPLRGRPRTPPPP-RPRPPTTPPRPYVGCPR 242


>06_03_0189 - 17697779-17698939
          Length = 386

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
 Frame = +2

Query: 35  YTISLFTLLLYISSFACVWWVPKNTPKPNLTHGCRKRRLR------AKASPKPIQPRPQV 196
           Y  S   ++    S +C+ W+        + H CRK++ R      A + P P     + 
Sbjct: 164 YAASAIYIVSVCFSDSCIMWIRSLADDRGVRHACRKKQTRKEVVRVAASGPAPDLWAWRK 223

Query: 197 NKSIPKEGCPQAGGYKNVAKT*NTLSDASVKTTAF 301
               P +G P   GY   +   N  +   V+   F
Sbjct: 224 YGQKPIKGSPYPRGYYRCSSNKNCAARKQVERCRF 258


>06_02_0035 + 10816723-10819497,10819964-10820011
          Length = 940

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 35  YTISLF-TLLLYISSFACVWWVPKNTPKPNLTHGC 136
           Y + L   +LLYIS  A + ++ K T     THGC
Sbjct: 336 YVLCLIGAVLLYISCLAVIKFLSKKTKPQAQTHGC 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,247,574
Number of Sequences: 37544
Number of extensions: 422945
Number of successful extensions: 991
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)