Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1028
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-1|CAA98950.1|   57|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    28   6.3  
U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z74473-1|CAA98950.1|   57|Caenorhabditis elegans Hypothetical
           protein F56H9.2 protein.
          Length = 57

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 108 VFLGTH-HTHAKDDMYKRRVNKEMVYDRGVWKEK 10
           VF  T  H   KDDMYKR+++   + DRGV  E+
Sbjct: 19  VFATTEEHNKGKDDMYKRKISAVGIKDRGVRLEQ 52


>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +2

Query: 98  PKNTPKPNLTHGCRKRRLRAKASPKPIQPRPQVNKSIPKEGCP 226
           P  TP   L  G RK    +K S  P+ P+PQVN S PK+  P
Sbjct: 373 PAPTPSAGLV-GSRKELFSSKPSG-PVLPKPQVNGS-PKKWPP 412


>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 428 TPLRRRQLGPPCYEAGDVRTMSLIKVASQAKMT 330
           +PL++ Q+GPPC  A  ++ + L   A   K+T
Sbjct: 238 SPLQKLQVGPPCCSARVLKFLELENNAENLKIT 270


>U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical
           protein F19G12.2 protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 20  HTPLSYTISLFTL---LLYISSFACVWWVPKNTPKPNLTH 130
           + P S  ++ F     + + SSFA ++W+ K    P LTH
Sbjct: 497 NAPFSERLAAFAAVEGIFFSSSFAAIFWLKKRGLLPGLTH 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,150
Number of Sequences: 27780
Number of extensions: 353105
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)