Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1028
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04900.1 68416.m00532 heavy-metal-associated domain-containin...    29   4.5  
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein...    28   5.9  
At5g41270.1 68418.m05016 expressed protein                             28   7.8  
At3g47490.2 68416.m05164 HNH endonuclease domain-containing prot...    28   7.8  
At3g47490.1 68416.m05165 HNH endonuclease domain-containing prot...    28   7.8  
At1g29690.1 68414.m03628 expressed protein                             28   7.8  
At1g21810.1 68414.m02729 expressed protein                             28   7.8  

>At3g04900.1 68416.m00532 heavy-metal-associated domain-containing
           protein contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 208

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 140 KRRLRAKASPKPIQPRPQVNKSIPKEGCPQAG 235
           KR    K   KP  P P V  + P E CP  G
Sbjct: 90  KRYATNKTQDKPSPPAPPVTATTPVETCPAGG 121


>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
           similar to siah-1A protein [Mus musculus] GI:297035;
           contains Pfam profile PF03145: Seven in absentia protein
           family
          Length = 326

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 401 PPC-YEAGDVRTMSLIKVASQAKMTLNGNEFGTRQM-QLF*RSRHLTCFKFWPHFCSH 234
           P C  E GD+R ++L KVA   ++       G  ++   + + +H T   F P+ C +
Sbjct: 96  PTCRQELGDIRCLALEKVAESLELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPY 153


>At5g41270.1 68418.m05016 expressed protein 
          Length = 258

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 104 NTPKPNLTHGCRKRRLRAKASPKPIQPRPQVNKSI 208
           +TPKP +    R RR+R   S KP +P+    K++
Sbjct: 188 DTPKPMMLTLERDRRIRKPKSKKPSEPQSVPEKTV 222


>At3g47490.2 68416.m05164 HNH endonuclease domain-containing protein
           contains Pfam domain PF01844: HNH endonuclease
          Length = 176

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 140 KRRLRAKASPKPIQPRPQVNKSIPKEGCPQAGGYKNVAKT*NTLSD 277
           +RR RA +S  P + RP+++   P     +A G K   KT  TL D
Sbjct: 46  RRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGK--VKTSATLLD 89


>At3g47490.1 68416.m05165 HNH endonuclease domain-containing protein
           contains Pfam domain PF01844: HNH endonuclease
          Length = 234

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 140 KRRLRAKASPKPIQPRPQVNKSIPKEGCPQAGGYKNVAKT*NTLSD 277
           +RR RA +S  P + RP+++   P     +A G K   KT  TL D
Sbjct: 46  RRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGK--VKTSATLLD 89


>At1g29690.1 68414.m03628 expressed protein
          Length = 561

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 407 LGPPCYEAGDVRTMSLIKVASQAKMTLNGNEFGTRQMQLF*RSRHLTCFK--FWPHFCSH 234
           +GP  + + D  T+   K  +  +++L G+    +Q +L    +HL        PH+ SH
Sbjct: 344 MGPKLFISADQVTVGR-KPVTGLRLSLEGS----KQNRLSIHLQHLVSLPKILQPHWDSH 398

Query: 233 LPEGNPPWE 207
           +P G P W+
Sbjct: 399 VPIGAPKWQ 407


>At1g21810.1 68414.m02729 expressed protein
          Length = 628

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 401 PPCYEAGDVRTMSLIKVASQAKMTLNGNEFGTRQMQLF*RSRH 273
           PPC  + D  T+SLI  +++     N N F T    +F RSR+
Sbjct: 584 PPCSSSSDSTTVSLIMSSNRGSSEKNRNGFAT----VFTRSRN 622


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,155,204
Number of Sequences: 28952
Number of extensions: 329390
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)