Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1027
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    27   2.5  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   3.3  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   4.4  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    25   7.7  

>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 562 LSACQTVNREFVSFDRFLYSYCELF 636
           L AC++ N+ F  FDR L + C L+
Sbjct: 130 LYACKSENQAFQFFDRLLQNECPLY 154


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 179 PDTNYN-KSITLCITTSLTVYRLLRIDKNHTTHYFNFSNIERIRKL 45
           P  N++  SI + + T + +  LL+IDKN+     N    ER+R L
Sbjct: 358 PLANFDVTSIPVEVATEIVLTSLLKIDKNYFHQQINMLR-ERVRSL 402


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 191 HLRKPDTNYNKSITLCITTSLTVYRLLRIDKNHTTHYFNFSNIERIRKL*VAGRREK 21
           +L+  D +YN+   L   +SL   R L++D NH        +++ + KL     R K
Sbjct: 669 NLQYLDISYNQLEDLTGLSSLIHLRELKVDSNHLWSLDGIQHLDGLLKLSACNNRIK 725


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 620 LYKNRSNETNSRLTV*QADNLYQHFKLTFYLH 525
           + +NR  E+  +L++ Q + L+Q+    + LH
Sbjct: 87  ILRNRITESKEKLSLSQKEKLFQNLPTVYILH 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,165
Number of Sequences: 5004
Number of extensions: 55259
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)