Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1027
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46457| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)                      29   2.6  
SB_32330| Best HMM Match : DUF1104 (HMM E-Value=8.2)                   28   6.1  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   28   6.1  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_46457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 188 LRKPDTNYNKSITLCITTSLTVYRLLRIDKNHTTHY 81
           +R+ +   +K+I +C T+ L V +L +++   T HY
Sbjct: 77  IREKELGLDKAINICCTSKLAVRQLHKMEPTKTVHY 112


>SB_14214| Best HMM Match : AmoC (HMM E-Value=3.2)
          Length = 451

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 107 FSITDTQ*D-WLLYIALSICCN*CLVSV-DVCRS 202
           F  TD + D W L+    +CCN C +SV D+C S
Sbjct: 147 FVTTDNRTDIWSLWERAKVCCNQCFLSVCDLCCS 180


>SB_32330| Best HMM Match : DUF1104 (HMM E-Value=8.2)
          Length = 169

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 430 M*RSVREKATENEFLVRMGIQVESTVEYNSSACK*NVSLKCWYKLSACQTVN 585
           M R+VR+K    + + R G+++    E +    K      CW  L  C  V+
Sbjct: 113 MGRAVRDKGLVKDAMCRTGVEIHLNKEQSCGQKKRQKRSPCWVCLGWCSRVD 164


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 173 TNYNKSITLCITTSLTVYRLLRIDKNHTT 87
           TNY   +T+ ITT+ T    + I  N+TT
Sbjct: 430 TNYTTIVTITITTNYTTIVTITISTNYTT 458



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 173 TNYNKSITLCITTSLTVYRLLRIDKNHTT 87
           TNY   +T+ ITT+ T    + I  N+TT
Sbjct: 454 TNYTTIVTITITTNYTTIVTITITTNYTT 482



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 173 TNYNKSITLCITTSLTVYRLLRIDKNHTT 87
           TNY  ++T  ITT+ T    + I  N+TT
Sbjct: 524 TNYTTTVTTTITTNYTTIVTITITTNYTT 552


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 97  ITRHTTLIFQTSNGYENCESREGGKSNERSAR 2
           + RH  +I ++  G   CESR  GKS    A+
Sbjct: 459 VARHVRVILESRKGVLACESRFTGKSTAECAK 490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,874,440
Number of Sequences: 59808
Number of extensions: 420528
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)