Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1026
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24500.2 68417.m03513 hydroxyproline-rich glycoprotein family...    29   2.5  
At4g24500.1 68417.m03512 hydroxyproline-rich glycoprotein family...    29   2.5  
At4g23350.1 68417.m03368 expressed protein predicted proteins, A...    28   7.6  

>At4g24500.2 68417.m03513 hydroxyproline-rich glycoprotein family
           protein
          Length = 290

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -1

Query: 727 RGLS-SFTRTGGRAKAQPGGVGFANNCPSA-----LGTYIAKTCQRAHGSS--GVKWLP 575
           RG++ SF R GGR   +PG   F +N  +      L   + K C  A  SS  G  WLP
Sbjct: 190 RGMNTSFGRDGGRRPMEPGAERFYSNSMAEDPWKHLKPVLWKNCSDASSSSSTGQAWLP 248


>At4g24500.1 68417.m03512 hydroxyproline-rich glycoprotein family
           protein
          Length = 319

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -1

Query: 727 RGLS-SFTRTGGRAKAQPGGVGFANNCPSA-----LGTYIAKTCQRAHGSS--GVKWLP 575
           RG++ SF R GGR   +PG   F +N  +      L   + K C  A  SS  G  WLP
Sbjct: 219 RGMNTSFGRDGGRRPMEPGAERFYSNSMAEDPWKHLKPVLWKNCSDASSSSSTGQAWLP 277


>At4g23350.1 68417.m03368 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 386

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -1

Query: 511 EMMEFKTMATKSAVRLLPATNGEVGDCFRTLNVLNFE*RLLFLHRVIVHGTMQRGTLTGK 332
           EM        K A++     +G++ DC      L F+  LL  H V +  T     +TG 
Sbjct: 38  EMKRQLKAINKPAIKSFKTEHGDIFDCIDIHKQLAFDHHLLKNHSVQLRPTTVPEYITGN 97

Query: 331 NV 326
           N+
Sbjct: 98  NI 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,807
Number of Sequences: 28952
Number of extensions: 339811
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)