Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1025
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    31   0.35 
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    29   1.4  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    27   5.8  
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743...    27   7.6  
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466...    27   7.6  

>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 52  AGTNFSNEIRTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTSCESARVGTTTPPI 228
           +GT+   +    ++  +D  G GIT+C  +N+ +K    ++ G      + RV   T  +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 229 SAV 237
           +AV
Sbjct: 89  NAV 91


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 7   GAFVLKRCTDVRIPQAGTNFSNEIRTQQMFTIDFHGE 117
           G  ++ RCT V I   G N   +I T      DFHGE
Sbjct: 153 GGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 275 RCNYT*DLRTYISRWVAHLRCRCL 346
           RC  T  LR    RW  HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324


>03_02_0320 +
           7437528-7437623,7437725-7437772,7438885-7438994,
           7439651-7439735,7439839-7440115,7440296-7440454,
           7440563-7440666,7440930-7441168,7441265-7441583,
           7441665-7442069,7442157-7442294,7442376-7442555
          Length = 719

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = +1

Query: 10  AFVLKRCTDVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKNQTRKIIICVITGGRTS 189
           A V ++C DV   Q G    +++ T Q+F +D  G    + ++ +    +  +  G   +
Sbjct: 450 AQVPEQCIDVLPSQFGRQNQDQVTTNQVFEVD-QGMDCAAVSEGEWADTLTDISVGYLLT 508

Query: 190 CESARVGTTTPPISAVK 240
             S    T  P  S VK
Sbjct: 509 EASRGANTDCPGTSVVK 525


>01_06_1141 +
           34845834-34845931,34846110-34846198,34846535-34846686,
           34847473-34847583,34847702-34847818,34847989-34848156,
           34848563-34848703
          Length = 291

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 275 GYRTLRTETHYCFTAEIGGVVVPTR-ADSQEVLPPVITQI 159
           GY  L   TH    AE+   V+ TR A +QE+L  ++  +
Sbjct: 206 GYEHLSDPTHILIEAELPADVIDTRLAQAQEILEDLLKPV 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,790
Number of Sequences: 37544
Number of extensions: 289439
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)