Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1024
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 29 0.43
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 4.0
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 26 4.0
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 26 5.3
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 26 5.3
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 5.3
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 7.1
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 9.3
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 9.3
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 9.3
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 29.5 bits (63), Expect = 0.43
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 287 NRQQSSSPGVRN--RFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTI 451
N + S P V++ + P + + +NESG D ++ V QPQ +I T+
Sbjct: 588 NASEESYPNVKHISKLPLINDSSDNESGNQENDDAVANESTKVVVDNQQPQPKISTV 644
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 221 PFRSGRAVLVRDRPWEVT*LITQSMQ 144
PF+S +++D PW +T + Q++Q
Sbjct: 466 PFKSNIFYVLKDVPWSITKYLPQALQ 491
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 236 VGVGMPFRSGRAVLVRDRPWEVT*LITQSMQTLCFGSGPLTTTV 105
VG+ R+G+ VLV D +E + S+ + G GP+T +
Sbjct: 263 VGINAVQRNGKRVLVGDVHFESASKVASSITPVPGGVGPMTVAM 306
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +2
Query: 299 SSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQ 433
SS P V + PS++ + +G+D + + +R ++ + + P+
Sbjct: 297 SSPPSVPQKIPSSNHKSQQANGSD-QGNEGKRMALIQQLLALTPE 340
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 230 HRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENES 361
H R + E + + D+ A R QSS G N STSST S
Sbjct: 442 HERSLLEQLADALNDS-TARRTQSSPSGT-NSSTSTSSTSSKHS 483
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 188 LSQEQRDRTEMAFQHRRDVRELTREIIRDARVANRQQ-SSSPGVRNRFPSTSSTDENESG 364
L+ + D E+ Q R V+E + + ++ N ++ +S V N + S+DENE+
Sbjct: 109 LNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDENEAN 168
Query: 365 T 367
T
Sbjct: 169 T 169
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = -1
Query: 95 QYIKLHLTALYLNKNKNNRHELRS--VNGIA 9
QY+ L L ALYL+++ +R E R+ ++G+A
Sbjct: 497 QYVALVLMALYLSRDSVSRLERRNEIIDGLA 527
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 123 SRTKTKCLHGLSDQLCYLPRPVSHKNSAT 209
S TKTK + +D++ +L +SH + T
Sbjct: 545 SPTKTKITNSYTDKILFLGTNISHSKNVT 573
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 457 FPYCHYLTLGLHAGDSVEDGLPARPVRLAVCAALIFV 347
F C + LHA +D L R RL + AAL+ +
Sbjct: 50 FSKCFFFVADLHALTVPQDPLKFRQARLDMLAALLAI 86
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 552 IFSASLGYALYLWSYSH 502
+F++SLG ++YL +Y H
Sbjct: 226 VFASSLGLSIYLGTYEH 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,357
Number of Sequences: 5004
Number of extensions: 52637
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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