Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1022
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    28   1.3  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   2.3  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    26   4.1  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   7.1  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    25   9.4  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 508 KVSYVHYFHPIFLLCLYLFSYQVSHLSLFSLFQN 407
           KV++  Y H    +  ++F+Y    L L SLF N
Sbjct: 419 KVTFFQYLHDYSYIATFVFTYVFQALMLGSLFYN 452


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 416  KRKERKMRNLVRKKIKTQKKNRMKVMNIRHLQYRS*EKFQSLVI*KREKPSIS 574
            K+  R+ +N  R+K+  Q  N      IR++  RS  +FQ + I   E PS S
Sbjct: 1138 KKSSRRRKNEKRRKLNEQNPN------IRNVPERSSSRFQGIRINYSEAPSSS 1184


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 413 KKRKERKMRNLVRKKIKTQKKNRMKVMNIR 502
           +KRK +KM  L+ K+ +  K+ + K+ N+R
Sbjct: 18  QKRKSKKMEELLSKQREECKELQSKITNLR 47


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 10   VLKISLKDGVQTVLKVEDTENKALKESPTSEKLKE 114
            +L +S    V   LKV+  + + LKE+ T E+LKE
Sbjct: 1924 LLSLSTLGHVLNFLKVQKIDFEKLKETLTIEQLKE 1958


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 178 LISCDYFWFSHSIYLYLYFWSFLSTFHWLGILSKLCFQYLQLSTLF 41
           ++S   F  SH I  +  F+SFLS F  L  +   CF     S  F
Sbjct: 165 ILSHSLFHISHLISFHFLFFSFLS-FPLLSFILFPCFSLFLSSNSF 209


>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 526 KIPKLSDLKKGKAFYINRK*ESLTIPNPK 612
           KI K+SDL++ +  Y +R    + I NP+
Sbjct: 173 KIRKISDLRRKQLAYYDRTMAKMCIVNPR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,779
Number of Sequences: 5004
Number of extensions: 22658
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)