Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1022
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    29   2.4  
04_03_1026 - 21806124-21806225,21807017-21807055,21807307-218074...    27   9.7  

>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 407 ILKKRKERKMRNLVRKKIKTQKKNRMK 487
           ++KK+K++K +   +KK K +KKN+ K
Sbjct: 66  VMKKKKKKKKKKKKKKKKKKKKKNKKK 92



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 413 KKRKERKMRNLVRKKIKTQKKNRMK 487
           KK+K++K +N  +KK K +KK + K
Sbjct: 80  KKKKKKKKKNKKKKKKKKKKKKKKK 104


>04_03_1026 -
           21806124-21806225,21807017-21807055,21807307-21807407,
           21807924-21808185,21808334-21808458,21809058-21809637
          Length = 402

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 547 NH*ALEFFLASILKVSYVHYFHPIFLLCLYLFSYQVSHLSLFSLFQ 410
           NH A     ++++K+ Y +  HP+  +   L S+ +S L L S+++
Sbjct: 38  NHDAPGLLTSTLMKIRYFYEAHPV-AVAFILLSFGLSVLILLSVYE 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,213,801
Number of Sequences: 37544
Number of extensions: 107572
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)