Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1022
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_51421| Best HMM Match : VWA (HMM E-Value=3.5e-27)                   29   2.5  
SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)                   29   3.3  
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             28   7.5  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    28   7.5  
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)          27   9.9  
SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)               27   9.9  

>SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = +2

Query: 407 ILKKRKERKMRNLVRKKIKTQKKNRMKVMNIRHLQYRS*EKFQS 538
           ++K+RK       V+++++  +K RM V+ +  L++R+  KF++
Sbjct: 227 VVKRRKVPGNETCVKQQLRPHQKARMNVLKLAVLKFRNTRKFEA 270


>SB_51421| Best HMM Match : VWA (HMM E-Value=3.5e-27)
          Length = 576

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +2

Query: 401 LKILKKR---KERKMRNLVRKKIKTQKKNRMKVMNIRHLQY 514
           L+IL KR   + R+    +RK++  Q+K   + M IR+L+Y
Sbjct: 524 LRILIKRLRDRRRRQNERLRKRLDRQRKRYKREMRIRYLRY 564


>SB_6481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +2

Query: 404 KILKKRKERKMRNLVRKKIKTQKKNRMKVMNI 499
           + L K+KERK+RN +RK+I+ +KK   +++N+
Sbjct: 437 RALLKKKERKLRN-IRKRIE-KKKKEAEMVNV 466


>SB_50632| Best HMM Match : ShTK (HMM E-Value=0.0091)
          Length = 566

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +2

Query: 146 VRKPKVVTRNQIVRNIRV---KHVLRVINIRVAAALVD--TVVARTRKKIRI 286
           VR+  V+TR ++VR + V   +HVLR I +     +V   TV++R R   RI
Sbjct: 388 VRRITVITRTRVVRRVSVMSRRHVLRRITVLSRTRVVRGITVLSRARVVRRI 439


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 526 FLASILKVSY-VHYFHPIF--LLCLYLFSYQVSHLS 428
           +L  +  +SY   +F P+F  L+CLY  SY+  H S
Sbjct: 133 YLIRLYPISYRTIHFSPLFTYLICLYPISYRTIHFS 168


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/32 (31%), Positives = 25/32 (78%)
 Frame = +2

Query: 410 LKKRKERKMRNLVRKKIKTQKKNRMKVMNIRH 505
           ++++K++K+R+ VRK+++ ++  R K ++ RH
Sbjct: 603 IEQQKQKKLRD-VRKRLRAERLRRKKELHSRH 633


>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
          Length = 581

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 142 IYLYLYFWSFLSTFHWLGILSKLCFQYLQL 53
           ++ +LY  S    ++W+ I+++ CF  LQ+
Sbjct: 140 MFFWLYIVSVAVVYNWVFIIARQCFSQLQV 169


>SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)
          Length = 520

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 175 ISCDYFWFSHSIYLYLYFWSFLSTFHW 95
           I   Y ++SH IY Y  + S   TF+W
Sbjct: 312 IEMSYGFYSHGIYGYPVYHSVHDTFYW 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,757,282
Number of Sequences: 59808
Number of extensions: 131432
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)