Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1022
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U59212-1|AAB09671.1|  428|Caenorhabditis elegans transmembrane p...    31   0.93 
U39677-5|AAN71843.1|  383|Caenorhabditis elegans Innexin protein...    31   0.93 
U39677-4|AAN71842.1|  428|Caenorhabditis elegans Innexin protein...    31   0.93 
U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channe...    28   5.0  
AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying de...    28   5.0  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    28   5.0  
AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z50755-1|CAB61030.2|  386|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U93195-1|AAB51534.1|  386|Caenorhabditis elegans UNC-9 protein.        27   8.7  
U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.        27   8.7  

>U59212-1|AAB09671.1|  428|Caenorhabditis elegans transmembrane
           protein protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = -3

Query: 193 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGILSKLCFQYLQ 56
           NV ++ + C      F+  I+L+L+FW F+       S FHW+ I+S L  Q+++
Sbjct: 256 NVHHHTVQCVLMINMFNEKIFLFLWFWYFMVAFVSAVSMFHWI-IISFLPGQHMK 309


>U39677-5|AAN71843.1|  383|Caenorhabditis elegans Innexin protein 1,
           isoform b protein.
          Length = 383

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = -3

Query: 193 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGILSKLCFQYLQ 56
           NV ++ + C      F+  I+L+L+FW F+       S FHW+ I+S L  Q+++
Sbjct: 256 NVHHHTVQCVLMINMFNEKIFLFLWFWYFMVAFVSAVSMFHWI-IISFLPGQHMK 309


>U39677-4|AAN71842.1|  428|Caenorhabditis elegans Innexin protein 1,
           isoform a protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = -3

Query: 193 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGILSKLCFQYLQ 56
           NV ++ + C      F+  I+L+L+FW F+       S FHW+ I+S L  Q+++
Sbjct: 256 NVHHHTVQCVLMINMFNEKIFLFLWFWYFMVAFVSAVSMFHWI-IISFLPGQHMK 309


>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +2

Query: 401 LKILKKRKERKMRNLVRKKIKTQKKNRMKVMNIRHL 508
           L + KK+ +R+MRN VRK+++  K  + ++ ++ HL
Sbjct: 563 LHLNKKKADREMRN-VRKRLRMIKCEKCQIFDLSHL 597


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -3

Query: 205 VLYSNV--SNYLISCDYFWFSHSIYLYLYFWSFL 110
           VL+ N+  SN+ I+  Y  FS +I LYL+F  FL
Sbjct: 65  VLFLNILHSNWSINILYSVFSLTIVLYLFFCKFL 98


>AF130443-1|AAD28468.1|  956|Caenorhabditis elegans EAG K+ channel
           EGL-2 protein.
          Length = 956

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 526 KIPKLSDLKKGKAFYINRK*ESLTIPNPKTVKAYNSKFRK 645
           K  K++D+K+ K     RK E LT+PN   ++    + R+
Sbjct: 693 KFRKVADVKREKELDAKRKNEKLTLPNDHPIRKLLFRMRE 732


>AF036695-1|AAB88348.2|  956|Caenorhabditis elegans Egg laying
           defective protein 2 protein.
          Length = 956

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 526 KIPKLSDLKKGKAFYINRK*ESLTIPNPKTVKAYNSKFRK 645
           K  K++D+K+ K     RK E LT+PN   ++    + R+
Sbjct: 693 KFRKVADVKREKELDAKRKNEKLTLPNDHPIRKLLFRMRE 732


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 166 DYFWFSHSIYLYLYF--WSFLSTFHWLGILSKLCFQYLQLSTL 44
           D FW  + ++  L F  +SFL TF WL    K+  Q   L T+
Sbjct: 134 DKFWSKYYLHCGLAFALYSFLPTFFWLDFAIKVEIQNETLVTI 176


>AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.1 protein.
          Length = 912

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 517 SILKVSYVHYFHPIFLLCLYLF-SYQVSHLSLFSLFQ 410
           S+L +SY   F  IFL+ L LF  ++  HLS   L Q
Sbjct: 698 SLLSISYESLFMLIFLVLLTLFVRFEFGHLSDVELLQ 734


>Z71259-7|CAA95793.1|  423|Caenorhabditis elegans Hypothetical
           protein F13G3.8 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -3

Query: 193 NVSNYLISC--DYFWFSHSIYLYLYFWSFLSTFHWLGILSKLCFQYLQLSTLFE 38
           N+  Y I C      F+  I+L+LY W  L  F  L     LC+       L E
Sbjct: 258 NLQRYSIQCVLTLNMFNEKIFLFLYIWFLLVFFVTLFDSIFLCYNMFSSHKLVE 311


>Z50755-1|CAB61030.2|  386|Caenorhabditis elegans Hypothetical
           protein R12H7.1 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
 Frame = -3

Query: 193 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGI 86
           NV  + + C      F+  I+L+L+FW FL       S F+W+ I
Sbjct: 263 NVHRHTVQCVLMINMFNEKIFLFLWFWYFLLAGATLCSLFYWIYI 307


>U93195-1|AAB51534.1|  386|Caenorhabditis elegans UNC-9 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
 Frame = -3

Query: 193 NVSNYLISCDYF--WFSHSIYLYLYFWSFL-------STFHWLGI 86
           NV  + + C      F+  I+L+L+FW FL       S F+W+ I
Sbjct: 263 NVHRHTVQCVLMINMFNEKIFLFLWFWYFLLAGATLCSLFYWIYI 307


>U59210-1|AAB09669.1|  423|Caenorhabditis elegans EAT-5 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -3

Query: 193 NVSNYLISC--DYFWFSHSIYLYLYFWSFLSTFHWLGILSKLCFQYLQLSTLFE 38
           N+  Y I C      F+  I+L+LY W  L  F  L     LC+       L E
Sbjct: 258 NLQRYSIQCVLTLNMFNEKIFLFLYIWFLLVFFVTLFDSIFLCYNMFSSHKLVE 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,729,473
Number of Sequences: 27780
Number of extensions: 114568
Number of successful extensions: 501
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)