Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1022
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43080.1 68418.m05259 cyclin, putative similar to A-type cycl...    29   2.7  
At4g11385.1 68417.m01836 hypothetical protein                          27   8.1  

>At5g43080.1 68418.m05259 cyclin, putative similar to A-type cyclins
           from [Nicotiana tabacum] GI:1064931, [Catharanthus
           roseus] GI:2190259; contains Pfam profiles PF00134:
           Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
           domain
          Length = 355

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +1

Query: 520 LGKIPKLSDLKKGKAFYINRK*ESLTIPNPKTVKA 624
           LG++P LS++KK +     +K +S++IP  +T+ +
Sbjct: 38  LGELPNLSNIKKSRKATTKQKKKSVSIPTIETLNS 72


>At4g11385.1 68417.m01836 hypothetical protein
          Length = 143

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 404 KILKKRKERKMRNLVRKKIKTQKKN 478
           KI KK+K++K +   +KK K +KKN
Sbjct: 103 KIEKKKKKKKKKKKKKKKKKKKKKN 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,183,224
Number of Sequences: 28952
Number of extensions: 102352
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)