Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1020
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    28   1.8  
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    27   2.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   3.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   3.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    27   4.1  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   4.1  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   7.1  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   7.1  

>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 602 CR*AHGAQTGELLTLALARAVLGRIYPPDRKRD 504
           CR   G     LL  ALA  +LGR+YPP +K++
Sbjct: 144 CRALTGIAPAFLLPNALA--LLGRVYPPGKKKN 174


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 636 PLERLFQLHPNM*VSSRGSNRRVANTGPSKSSAWQNLPTG 517
           PL  L QL P+M   +  + +  A  GPS SS+  + P G
Sbjct: 132 PLRGLTQLRPSMKHVNEYTQKLKAAAGPSNSSSGTSTPRG 171


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 355 GSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSP 489
           G    +NG  +HH +R  +SS   L++ GS +E S  H P +  P
Sbjct: 659 GGEAVVNGNSQHHHNRDDASS--GLSSNGSENE-SLEHEPTNELP 700


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
 Frame = +1

Query: 373 NGAFRHHKHRSPSSSNPSLATKGST----SELSHRHSPLSFSPDLLSGSRFRSGG*ILPS 540
           + A  +  H    +S   L ++  T    S LS   +P+S + ++       S   ++P 
Sbjct: 367 DSAVTNQSHSQSQNSLHPLISQSETHSIFSALSETPTPVSGNGNVADAPPDFSLSQVMPL 426

Query: 541 TALARASVSNSPV*AP*AHLHVRVKLK*PLEGGARYPIRPIVSRITIH 684
             +A  S+  S V +P +  HV++  + P  G +  P+RP    +  H
Sbjct: 427 DLIA-PSMQPSAVSSPMSESHVQISSEMPRTGMSALPMRPRSQNVDKH 473


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 322 KPSTSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLS 480
           KPS    +R  G S ++  A    K    S S P +     T ++S +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 373 NGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLL 498
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 325 PSTSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELS-HRHSPLSFSPDLLS 501
           PS   +A    SS S + +  H    S SSS+PS  +  S+S  S    S +S S +++S
Sbjct: 46  PSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDVSASNEIIS 105

Query: 502 GS 507
            S
Sbjct: 106 SS 107


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +1

Query: 328 STSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLLSGS 507
           +TSP +    SS S + +       S SSS+ S ++  S+S  S   S  S S   +  +
Sbjct: 152 TTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPIT 211

Query: 508 RFRSGG*ILPSTALARASVSNSP 576
              S      S++ + +S S+ P
Sbjct: 212 SSTSSSHSSSSSSSSSSSSSSRP 234



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +1

Query: 325 PSTSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSP--DLL 498
           PS+S  +    SS S + +       S SSS+ S ++  S+S  S   S  S  P     
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214

Query: 499 SGSRFRSGG*ILPSTALARASVSNS 573
           S S   S      S++ +R S S+S
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSS 239


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 220 ACLKVIALLTAKTKQKFSTFIHQVNEIRFQSFKY*KNNIL 101
           A L  I L+  KT   F+T       + +  FKY +NN L
Sbjct: 594 ASLSTILLVLGKTTPSFTTLGAFTGNLGYPIFKYFQNNSL 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,275
Number of Sequences: 5004
Number of extensions: 62580
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)